Human21.fa.2.3.5.80.10.40.100000.500000.26.html

Inverted Repeats Finder Program written by:

Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.05

Sequence: chr21
Parameters: 2 3 5 80 10 40 100000 500000 -d 
Length:  46944323

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  26  of  259  ( 30966 repeats found )

Click on indices to view alignment

Table Explanation

Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17832724--17833026	303	17839966--17840256	291	6939	71.80	5.25	148	51.18	48.82	51.14	48.86	0.00	35672992	35672980
17829919--17830210	292	17839972--17840262	291	9761	75.59	2.37	216	48.89	51.11	48.88	51.12	0.00	35670182	35670181
17832189--17832491	303	17844261--17844559	299	11769	82.24	1.97	326	46.84	53.16	46.00	54.00	0.00	35676752	35676751
17839971--17840262	292	17844269--17844555	287	4006	78.72	4.39	251	49.05	50.95	48.07	51.93	0.00	35684531	35684529
17830950--17831268	319	17844243--17844554	312	12974	81.56	2.81	327	50.55	49.45	50.19	49.81	0.00	35675511	35675506
17839620--17839827	208	17844355--17844554	200	4527	80.77	3.85	200	50.49	49.51	50.00	50.00	0.00	35684182	35684176
17832194--17832478	285	17845317--17845596	280	12838	81.60	3.82	289	46.37	53.63	45.53	54.47	0.00	35677795	35677797
17845332--17845584	253	17847127--17847386	260	1542	79.77	4.20	237	46.78	53.22	44.02	55.98	0.00	35692711	35692718
17844263--17844556	294	17847813--17848106	294	3256	81.54	2.68	305	47.11	52.89	45.27	54.73	0.00	35692369	35692369
17835461--17835756	296	17847819--17848104	286	12062	81.14	4.04	290	44.33	55.67	41.91	58.09	0.00	35683575	35683565
17844278--17844500	223	17853429--17853659	231	8928	74.25	5.15	142	47.14	52.86	45.09	54.91	0.00	35697929	35697929
17844299--17844556	258	17853867--17854132	266	9310	73.88	4.48	162	48.28	51.72	47.98	52.02	0.00	35698423	35698428
17845342--17845605	264	17853859--17854132	274	8253	75.27	4.36	186	48.14	51.86	48.31	51.69	0.00	35699464	35699474
17845378--17845566	189	17856544--17856739	196	10977	75.63	4.57	136	46.75	53.25	45.64	54.36	0.00	35702110	35702117
17847808--17848108	301	17857846--17858150	305	9737	84.31	1.96	360	46.37	53.63	44.96	55.04	0.00	35705954	35705958
17847119--17847388	270	17857872--17858140	269	10483	80.81	1.11	276	47.87	52.13	46.12	53.88	0.00	35705260	35705259
17853862--17854132	271	17857884--17858150	267	3751	75.37	2.21	197	48.14	51.86	47.80	52.20	0.00	35712016	35712015
17856507--17856739	233	17857918--17858149	232	1178	77.02	2.13	190	49.25	50.75	48.62	51.38	0.00	35714657	35714658
17857865--17858149	285	17858922--17859207	286	772	81.88	1.05	308	48.34	51.66	47.23	52.77	0.00	35717071	35717071
17844285--17844556	272	17858926--17859202	277	14369	81.95	1.81	294	48.27	51.73	46.70	53.30	0.00	35703482	35703484
17858420--17858476	57	17859012--17859068	57	535	81.03	3.45	57	41.23	58.77	38.30	61.70	0.00	35717488	35717488
17845323--17845595	273	17858929--17859207	279	13333	79.36	3.56	252	47.46	52.54	47.09	52.91	0.00	35704524	35704530
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17858416--17858484	69	17859139--17859207	69	654	86.96	0.00	93	47.10	52.90	46.67	53.33	0.00	35717623	35717623
17857841--17858151	311	17862314--17862622	309	4162	87.78	0.64	428	45.16	54.84	44.32	55.68	0.00	35720465	35720465
17858415--17858531	117	17862746--17862864	119	4214	76.86	4.96	90	54.66	45.34	54.84	45.16	0.00	35721277	35721279
17853430--17853660	231	17866282--17866515	234	12621	75.83	6.25	160	48.60	51.40	47.25	52.75	0.00	35719942	35719942
17852330--17852597	268	17866292--17866565	274	13694	72.50	6.43	139	49.45	50.55	49.75	50.25	0.00	35718889	35718895
17853871--17854132	262	17866304--17866572	269	12171	75.55	6.20	179	48.40	51.60	47.83	52.17	0.00	35720436	35720436
17862324--17862625	302	17866261--17866572	312	3635	81.27	5.08	303	45.77	54.23	44.92	55.08	0.00	35728886	35728885
17862323--17862616	294	17867816--17868105	290	5199	80.41	2.70	286	44.86	55.14	43.70	56.30	0.00	35730432	35730431
17856543--17856743	201	17867883--17868081	199	11139	82.09	1.00	218	46.75	53.25	45.45	54.55	0.00	35724626	35724624
17858921--17859207	287	17867832--17868113	282	8624	83.62	1.74	329	49.38	50.62	49.17	50.83	0.00	35727039	35727037
17853891--17854132	242	17867851--17868088	238	13718	78.51	1.65	216	45.00	55.00	44.74	55.26	0.00	35721983	35721981
17858098--17858144	47	17869538--17869586	49	11393	85.71	4.08	59	57.29	42.71	59.52	40.48	0.00	35727682	35727684
17867813--17868091	279	17869395--17869672	278	1303	75.89	2.48	210	45.78	54.22	43.93	56.07	0.00	35737486	35737486
17866279--17866567	289	17869385--17869659	275	2817	74.14	5.52	173	47.87	52.13	46.51	53.49	0.00	35735952	35735950
17857874--17858145	272	17869682--17869956	275	11536	87.64	1.09	374	47.71	52.29	46.47	53.53	0.00	35727827	35727827
17866294--17866572	279	17869686--17869956	271	3113	78.93	3.57	245	48.91	51.09	48.42	51.58	0.00	35736258	35736252
17867841--17868105	265	17869685--17869956	272	1579	80.80	5.43	257	48.23	51.77	47.09	52.91	0.00	35737790	35737793
17869375--17869658	284	17870006--17870293	288	347	77.16	2.08	236	48.60	51.40	47.53	52.47	0.00	35739664	35739668
17869682--17869956	275	17870020--17870292	273	63	85.92	2.17	347	48.91	51.09	47.90	52.10	0.00	35739976	35739974
17858888--17859207	320	17870011--17870327	317	10803	82.92	2.17	355	52.28	47.72	52.06	47.94	0.00	35729218	35729218
17869603--17869686	84	17870115--17870197	83	428	72.94	3.53	49	52.10	47.90	51.61	48.39	0.00	35739801	35739800
17856510--17856739	230	17870066--17870293	228	13326	78.26	0.87	206	50.44	49.56	50.56	49.44	0.00	35726805	35726805
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17862319--17862616	298	17869995--17870293	299	7378	88.67	1.00	424	45.56	54.44	44.74	55.26	0.00	35732611	35732612
17862745--17862795	51	17870245--17870295	51	7449	79.25	7.55	43	63.73	36.27	66.67	33.33	0.00	35733040	35733040
17858131--17858150	20	17871810--17871829	20	13659	100.00	0.00	40	100.00	0.00	100.00	0.00	0.00	35729960	35729960
17858935--17859207	273	17872760--17873020	261	13552	80.43	6.52	246	46.82	53.18	45.04	54.96	0.00	35731967	35731959
17869385--17869657	273	17872756--17873020	265	3098	75.80	8.54	174	47.03	52.97	46.01	53.99	0.00	35742413	35742406
17866280--17866573	294	17873479--17873761	283	6905	84.00	7.67	314	47.49	52.51	46.43	53.57	0.00	35740052	35740043
17869995--17870294	300	17873474--17873772	299	3179	86.38	1.00	391	46.24	53.76	45.00	55.00	0.00	35743768	35743768
17872744--17872994	251	17873508--17873772	265	513	80.83	6.01	245	42.64	57.36	40.93	59.07	0.00	35746502	35746509
17871299--17871352	54	17873480--17873533	54	2127	83.33	0.00	63	53.70	46.30	53.33	46.67	0.00	35744832	35744832
17867816--17868104	289	17873480--17873772	293	5375	82.03	2.71	309	45.70	54.30	44.21	55.79	0.00	35741584	35741587
17874182--17874315	134	17874522--17874654	133	206	75.00	3.68	92	49.06	50.94	49.02	50.98	0.00	35748837	35748836
17874547--17874802	256	17874954--17875218	265	151	73.78	4.87	158	45.68	54.32	43.15	56.85	0.00	35749756	35749765
17872755--17873019	265	17874952--17875228	277	1932	76.51	7.12	192	46.68	53.32	45.12	54.88	0.00	35747971	35747975
17870007--17870286	280	17874948--17875227	280	4661	77.58	0.71	243	47.50	52.50	46.33	53.67	0.00	35745234	35745234
17866281--17866570	290	17874948--17875227	280	8377	76.45	5.46	209	48.25	51.75	46.88	53.13	0.00	35741518	35741508
17874948--17875255	308	17875735--17876046	312	479	77.43	5.64	242	50.16	49.84	49.39	50.61	0.00	35750990	35750990
17869684--17869956	273	17875776--17876050	275	5819	75.26	6.36	180	49.82	50.18	47.89	52.11	0.00	35745732	35745731
17873480--17873761	282	17875762--17876048	287	2000	79.45	5.14	254	48.15	51.85	46.55	53.45	0.00	35749523	35749525
17869385--17869677	293	17875741--17876043	303	6063	76.77	7.74	212	48.83	51.17	47.90	52.10	0.00	35745418	35745424
17862322--17862605	284	17875762--17876050	289	13156	76.19	5.10	208	47.29	52.71	45.54	54.46	0.00	35738367	35738369
17875893--17876050	158	17876132--17876290	159	81	74.07	4.32	100	47.95	52.05	46.67	53.33	0.00	35752182	35752183
17875772--17875827	56	17876220--17876276	57	392	77.59	5.17	45	43.36	56.64	42.22	57.78	0.00	35752047	35752047
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17875760--17875897	138	17876355--17876491	137	457	77.70	2.16	117	48.73	51.27	48.15	51.85	0.00	35752252	35752251
17873476--17873772	297	17878739--17879030	292	4966	84.28	3.01	345	45.33	54.67	44.84	55.16	0.00	35752511	35752511
17869684--17869956	273	17878764--17879026	263	8807	82.85	4.38	289	47.39	52.61	46.26	53.74	0.00	35748720	35748717
17869365--17869670	306	17878738--17879035	298	9067	77.00	7.03	222	47.68	52.32	47.72	52.28	0.00	35748408	35748408
17878741--17879049	309	17879690--17880004	315	640	83.28	3.15	349	47.12	52.88	46.97	53.03	0.00	35758739	35758745
17869981--17870291	311	17879711--17880020	310	9419	83.39	1.60	356	48.31	51.69	47.89	52.11	0.00	35750002	35750001
17866279--17866572	294	17879714--17879996	283	13141	81.76	5.07	292	47.49	52.51	47.52	52.48	0.00	35746286	35746277
17875752--17876053	302	17879708--17880005	298	3654	75.40	5.83	202	48.33	51.67	47.64	52.36	0.00	35755761	35755758
17867820--17868106	287	17879713--17880002	290	11606	81.91	3.07	303	46.27	53.73	45.00	55.00	0.00	35747819	35747820
17872748--17873027	280	17879711--17880002	292	6683	77.29	6.10	219	46.15	53.85	44.74	55.26	0.00	35752738	35752742
17869140--17869224	85	17880549--17880641	93	11324	75.27	8.60	55	80.90	19.10	87.14	12.86	0.00	35749773	35749777
17878751--17878990	240	17893412--17893656	245	14421	73.68	3.64	151	47.01	52.99	43.96	56.04	0.00	35772402	35772407
17893669--17893970	302	17895069--17895366	298	1098	88.12	1.98	414	45.50	54.50	44.94	55.06	0.00	35789039	35789038
17893371--17893657	287	17895082--17895364	283	1424	76.90	3.45	225	48.42	51.58	46.64	53.36	0.00	35788739	35788739
17893675--17893968	294	17898351--17898643	293	4382	84.28	3.68	341	45.49	54.51	44.44	55.56	0.00	35792319	35792318
17910223--17910466	244	17910522--17910760	239	55	81.22	2.86	246	50.93	49.07	51.26	48.74	0.00	35820988	35820982
17908721--17908947	227	17910527--17910754	228	1579	74.24	1.31	157	52.09	47.91	52.35	47.65	0.00	35819474	35819474
17898404--17898643	240	17910534--17910769	236	11890	81.67	1.67	252	48.32	51.68	47.96	52.04	0.00	35809177	35809176
17902437--17902574	138	17910531--17910667	137	7956	73.91	0.72	94	51.27	48.73	50.98	49.02	0.00	35813105	35813104
17908662--17908925	264	17912751--17913012	262	3825	76.78	3.00	208	50.00	50.00	49.27	50.73	0.00	35821676	35821675
17902273--17902550	278	17912756--17913024	269	10205	72.95	5.34	152	50.09	49.91	48.29	51.71	0.00	35815306	35815305
17912306--17912378	73	17912761--17912831	71	382	76.71	2.74	57	47.92	52.08	44.64	55.36	0.00	35825139	35825139
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17910166--17910432	267	17912754--17913015	262	2321	83.64	3.35	300	47.26	52.74	47.11	52.89	0.00	35823186	35823183
17898351--17898634	284	17912745--17913023	279	14110	81.05	2.46	286	45.47	54.53	44.16	55.84	0.00	35811379	35811373
17912270--17912304	35	17912978--17913012	35	673	82.86	0.00	40	48.57	51.43	48.28	51.72	0.00	35825282	35825282
17912932--17913011	80	17913439--17913520	82	427	74.39	2.44	55	48.77	51.23	47.54	52.46	0.00	35826450	35826450
17912716--17912935	220	17913566--17913807	242	630	74.07	9.88	123	53.25	46.75	51.67	48.33	0.00	35826501	35826521
17910158--17910360	203	17917226--17917430	205	6865	79.13	1.94	189	47.30	52.70	46.63	53.37	0.00	35827586	35827587
17912756--17913041	286	17921248--17921534	287	8206	82.41	2.41	311	48.34	51.66	47.70	52.30	0.00	35834289	35834289
17910534--17910769	236	17921318--17921554	237	10548	79.08	2.09	218	48.63	51.37	49.21	50.79	0.00	35832087	35832087
17908651--17908946	296	17922693--17922991	299	13746	74.58	1.00	212	49.24	50.76	48.88	51.12	0.00	35831639	35831639
17921247--17921563	317	17922689--17923010	322	1125	81.42	2.17	332	47.42	52.58	46.39	53.61	0.00	35844252	35844252
17910168--17910455	288	17922695--17922981	287	12239	84.83	1.72	350	47.48	52.52	46.75	53.25	0.00	35833150	35833149
17913617--17913797	181	17922696--17922870	175	8898	79.24	5.46	156	49.72	50.28	49.66	50.34	0.00	35836493	35836485
17922717--17922965	249	17923313--17923559	247	347	82.00	1.60	267	46.17	53.83	45.85	54.15	0.00	35846278	35846276
17910525--17910769	245	17923341--17923594	254	12571	79.22	4.31	223	50.50	49.50	52.48	47.52	0.00	35834110	35834111
17917225--17917310	86	17923590--17923675	86	6279	81.40	0.00	92	56.98	43.02	57.14	42.86	0.00	35840900	35840900
17922693--17922871	179	17923590--17923768	179	718	71.82	2.21	99	52.23	47.77	51.54	48.46	0.00	35846461	35846461
17922909--17922971	63	17923627--17923689	63	655	76.56	3.13	49	42.06	57.94	38.78	61.22	0.00	35846598	35846598
17926064--17926301	238	17926774--17927012	239	472	72.95	4.51	136	44.44	55.56	42.13	57.87	0.00	35853075	35853076
17922693--17922991	299	17926775--17927070	296	3783	84.67	1.67	360	44.87	55.13	44.09	55.91	0.00	35849766	35849765
17923304--17923596	293	17931307--17931597	291	7710	73.63	12.22	136	50.17	49.83	49.78	50.22	0.00	35854903	35854902
17926775--17927075	301	17931307--17931615	309	4231	78.13	9.38	230	46.89	53.11	45.20	54.80	0.00	35858382	35858388
17921251--17921554	304	17931318--17931629	312	9763	75.31	9.88	184	47.40	52.60	44.67	55.33	0.00	35852872	35852879
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
17927623--17927759	137	17931308--17931441	134	3548	76.98	5.04	104	48.71	51.29	45.79	54.21	0.00	35859067	35859069
17923568--17923770	203	17931309--17931506	198	7538	74.04	7.21	116	55.36	44.64	55.19	44.81	0.00	35855079	35855079
17931431--17931473	43	17931895--17931938	44	421	81.82	2.27	46	48.28	51.72	44.44	55.56	0.00	35863368	35863369
17931311--17931595	285	17931926--17932217	292	330	71.95	9.57	123	49.91	50.09	47.25	52.75	0.00	35863521	35863524
17922691--17922990	300	17931907--17932219	313	8916	78.80	6.01	259	47.47	52.53	45.38	54.62	0.00	35854897	35854900
17917226--17917425	200	17931911--17932119	209	14485	77.14	5.24	158	48.90	51.10	47.53	52.47	0.00	35849336	35849338
17923404--17923558	155	17936536--17936688	153	12977	72.90	1.29	96	47.73	52.27	46.90	53.10	0.00	35860094	35860094
17923576--17923773	198	17936504--17936699	196	12730	72.50	3.00	113	55.84	44.16	58.62	41.38	0.00	35860277	35860279
17923901--17924032	132	17936676--17936810	135	12643	77.94	3.68	112	58.43	41.57	59.43	40.57	0.00	35860708	35860710
17935655--17935824	170	17939240--17939404	165	3415	78.24	2.94	145	54.93	45.07	56.39	43.61	0.00	35875064	35875064

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259