Inverted Repeats Finder Program written by:
Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.05
Sequence: chr21
Parameters: 2 3 5 80 10 40 100000 500000 -d
Length: 46944323
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.21, N:0.27
File 26 of 259
Found at i: 17840044 center: 35672993 interval size: 300 g: 3
Alignment explanation
Indices: 17832724--17833026,17839966--17840256 Loop: 6939 Score: 148
Left Length: 303 Right Length: 291 Average length: 297.0
3 most common centers (desc): 35672980 35672991 35672993
17832714 >> (LF) GCTGGATGCA
17840266 << (RF) CGGTCCGTGC
17832724 >> GTGACCCATGCCTGTAATTCCAGCACTTTGGGAGGCTGAGGTGGGAGGATTACTTGAGCCCTGGAGTTCAAGACC >> 17832798
17840256 << ***C*A**G*********G******T**GT******GT****T**A*T**G*AG***TCA*T*******C***** << 17840182
17832799 >> AGCTTGGGCAACATAACGAGACTGCAACTCCACTGGGAAAATAAAAATAAAAATAAAATTAG-TGGGCATGGTGG >> 17832872
17840181 << ***G**TG******---*-*--**T***G***-*GAGA*G-**C*****G***-*---**C*G****A******* << 17840119
17832873 >> CACATACCTGTAGTCCCAGCTCCTTGGGAGGCTGAGGCAGGAGAGGATCCCTTGAGCCCAGGGGTTTGAGGCCAC >> 17832947
17840118 << *****CT**T**T********T******************T***TG-*C*-****T**AC**T*CGC****AAC* << 17840046
17832948 >> AGTGAGCCTTGGTTGTGCCACAGCACTTCAGCCTGGGCAACAG-AGTGAGACCCTGTTTCAAAAAAATAGATAAA >> 17833021
17840045 << ********CTGT********AA***A*G************A*TG*****T**A****G*********T*T*T*** << 17839971
17833022 >> TAAAA >> 17833026
17839970 << G**** << 17839966
Statistics
Matches: 219 (71.80%), Mismatches: 70 (22.95%), Indels: 16 (5.25%)
ATpairs: 51.14%, CGpairs: 48.86%, GTpairs: 0.00%
:i = 17840044
tupleindex: 3
intervalindex: 1
matches_in_interval: 107.0000
lowcenter: 35672969
highcenter: 35673017
testcenter: 35672993
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17840238 center: 35670181 interval size: 300 g: 3
Alignment explanation
Indices: 17829919--17830210,17839972--17840262 Loop: 9761 Score: 216
Left Length: 292 Right Length: 291 Average length: 291.5
3 most common centers (desc): 35670181 35670183 35670182
17829909 >> (LF) TTATTGGCTG
17840272 << (RF) ACATGTCGGT
17829919 >> GGCACGTTGGCTTACACCTGTACTCCCAGCATTTTGATAGCCCCAGGCAGGTGGATCGCCTGAGTTCGGGAGTTC >> 17829993
17840262 << ******C*****G**C******T********T**GTCC**C**T***A*****T***TA****TC**T******* << 17840188
17829994 >> AAGACCAGCCTGAATAACACAGTGAGACCCCATCTCTACAAAAAAATACAAAAATTAGTGGGGCATGGTGGCG-- >> 17830068
17840187 << C************GG****AC****T*************A*C***-*******-**C*GA***A********TGT << 17840115
17830067 >> TGCACCTGTAGTCCCAGCTACTCGAGAGGCTAAGGTGGGAGGATGGCTTGAGCCCAGCAGGTGGAGGCTGCAGTG >> 17830141
17840114 << **-**-*T**T***********A*C******C***GT*T**T*GA******T**AC*C***G*****A******* << 17840042
17830142 >> AGCCAAGATTGTGTCACTGCACTCTAGCCTGGGTGACAG-AGCCAGACTCTGCCTCCAAAATAAAGAAAA >> 17830210
17840041 << ****C*G******G**A****A**G********GT*A*TG**AC*T******A***T****T***T**** << 17839972
Statistics
Matches: 223 (75.59%), Mismatches: 65 (22.03%), Indels: 7 (2.37%)
ATpairs: 48.88%, CGpairs: 51.12%, GTpairs: 0.00%
:i = 17840238
tupleindex: 3
intervalindex: 1
matches_in_interval: 115.0000
lowcenter: 35670157
highcenter: 35670205
testcenter: 35670181
im3: 39.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17844398 center: 35676752 interval size: 300 g: 3
Alignment explanation
Indices: 17832189--17832491,17844261--17844559 Loop: 11769 Score: 326
Left Length: 303 Right Length: 299 Average length: 301.0
3 most common centers (desc): 35676751 35676752 35676748
17832179 >> (LF) AAGAGGAGGT
17844569 << (RF) GGGTGGTTTC
17832189 >> ATCTTTTTTTTTTTCTTTTTAAGATGGAGTCTCTCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGACCTCGGCT >> 17832263
17844559 << **************-*****C***G--*****ACA***T*G********T*****************A**A**** << 17844488
17832264 >> CACTGCAACCTCCACCTCCCGGGTTCAAGCCATTCTCCTGCTTCAGCCTCCTGAGCAGCTGAGACCGTAGGCATG >> 17832338
17844487 << **T****************A*****T****C**********G*********G***C*****C***ATG*T*ACGG << 17844413
17832339 >> TGCCACCACGTCCGGCTAATTTTTATATTTT-AGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAGA >> 17832412
17844412 << GT**********A*-*********C******A********GT**********TGT**C***A**A*******-** << 17844340
17832413 >> TCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCACAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCAGC >> 17832487
17844339 << T**********A***************G*********T**********G******GT*****A****A******* << 17844265
17832488 >> AAGA >> 17832491
17844264 << A*** << 17844261
Statistics
Matches: 250 (82.24%), Mismatches: 48 (15.79%), Indels: 6 (1.97%)
ATpairs: 46.00%, CGpairs: 54.00%, GTpairs: 0.00%
:i = 17844398
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35676728
highcenter: 35676776
testcenter: 35676752
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17844442 center: 35684529 interval size: 300 g: 3
Alignment explanation
Indices: 17839971--17840262,17844269--17844555 Loop: 4006 Score: 251
Left Length: 292 Right Length: 287 Average length: 289.5
3 most common centers (desc): 35684529 35684531 35684526
17839961 >> (LF) GTTTTTTTTG
17844565 << (RF) GGTTTCTAGA
17839971 >> TTTTTTTTTTTTTTTGAGACAGAGTTTCACTGTTATTGCCCAGGCTGGAATGCAATGGCACAATGTCGGCTCACT >> 17840045
17844555 << **********************AG**CAA**---**G********T***C****C***AC*C**G*A******T* << 17844484
17840046 >> GCAACCTCCGCCTCCCAGGTTCAAGCAGTTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGTCATGTGCC >> 17840120
17844483 << *********T*****AC****T****CT****G***************C**C********G**G*---*-***** << 17844413
17840122 >> -ACCAT-ACC-CAGCCAATTTT-GTATTTCTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAAC >> 17840191
17844412 << G****GG**CA*A**A******A******A*********GT***********GT****G*A**A*********** << 17844338
17840192 >> TCCTGACTTCAGATGATTCACCTACCTTGGCCTCCTGAATTGCTGGGATTACAGGCGTGAGCCACCGTGCC >> 17840262
17844337 << *******G*A-*-****G*C***C***G*******GT**C********G*******T*****A******** << 17844269
Statistics
Matches: 233 (78.72%), Mismatches: 50 (16.89%), Indels: 13 (4.39%)
ATpairs: 48.07%, CGpairs: 51.93%, GTpairs: 0.00%
:i = 17844442
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 35684505
highcenter: 35684553
testcenter: 35684529
im3: 63.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17844454 center: 35675506 interval size: 300 g: 3
Alignment explanation
Indices: 17830950--17831268,17844243--17844554 Loop: 12974 Score: 327
Left Length: 319 Right Length: 312 Average length: 315.5
3 most common centers (desc): 35675506 35675510 35675508
17830940 >> (LF) GCATTATTTA
17844564 << (RF) GTTTCTAGAA
17830950 >> TTTTTTTTCTTTTTGAGACAGTGTCTCACTCTGTCTCCTAGGCTGAAGTGCAGTGGTGTGATCTCAGCTCACTGC >> 17831024
17844554 << ********A*************G*-*CA-***T**C**G****T*C************G*****AC*****T*** << 17844482
17831025 >> AACCTCTGCCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAACTGGGACTACAGGCGCCCACCAC >> 17831099
17844481 << ******GT*****AC****T****C*********************C**C*C***********T*A********* << 17844407
17831100 >> CATGCCCAGCTAATTTTTTGTATTTTTAATAGAGACGCGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCTT >> 17831174
17844406 << **G*A*A-**********-*********C*******TC**********GT******A**A*******C*****G* << 17844334
17831175 >> GACCTCAAATGATCCGCCCGTCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAACCTAA >> 17831249
17844333 << *****AC--*********A*G***C*******************G*************A***C******C*-**C << 17844262
17831250 >> AATGTATT-TTGATAAATGA >> 17831268
17844261 << *-*G*A**T**A***A**** << 17844243
Statistics
Matches: 261 (81.56%), Mismatches: 50 (15.63%), Indels: 9 (2.81%)
ATpairs: 50.19%, CGpairs: 49.81%, GTpairs: 0.00%
:i = 17844454
tupleindex: 3
intervalindex: 1
matches_in_interval: 137.0000
lowcenter: 35675482
highcenter: 35675530
testcenter: 35675506
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17844496 center: 35684176 interval size: 300 g: 3
Alignment explanation
Indices: 17839620--17839827,17844355--17844554 Loop: 4527 Score: 200
Left Length: 208 Right Length: 200 Average length: 204.0
3 most common centers (desc): 35684176 35684182 35684174
17839610 >> (LF) TTGCATTTAA
17844564 << (RF) GTTTCTAGAA
17839620 >> TTTTTTAATTTTTTGAGACAGAGTCTTGCTTTGTCACCCAGGCTGGAGGGCAGTGGCACGATCTTGGCTCACTGC >> 17839694
17844554 << ******AA*************--*****A*G*T**C*******T****A*******AC*************T*** << 17844482
17839695 >> AGCCTCTACCTCCCAAGTTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACACCAC >> 17839769
17844481 << *T****G******ACC***T*******A*****************G***C********G****T****G****** << 17844407
17839770 >> CACACCCAGCTAGGCTAACTTTTGTATTTTTGGTAAAGATGGGGTTTCACCATGTTGG >> 17839827
17844406 << ***CA*----*-*-****A************T***C***GT***********GT**** << 17844355
Statistics
Matches: 168 (80.77%), Mismatches: 32 (15.38%), Indels: 8 (3.85%)
ATpairs: 50.00%, CGpairs: 50.00%, GTpairs: 0.00%
:i = 17844496
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35684152
highcenter: 35684200
testcenter: 35684176
im3: 52.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17845475 center: 35677797 interval size: 300 g: 3
Alignment explanation
Indices: 17832194--17832478,17845317--17845596 Loop: 12838 Score: 289
Left Length: 285 Right Length: 280 Average length: 282.5
3 most common centers (desc): 35677797 35677790 35677795
17832184 >> (LF) GAGGTATCTT
17845606 << (RF) AAAGAAAAGG
17832194 >> TTTTTTTTTCTTTTTAAGATGGAGTCTCTCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGACCTCGGCTCACTG >> 17832268
17845596 << ****G**********C**C********C*C*****C*****************T*****T**A********-*-- << 17845525
17832269 >> CAACCTCCACCTCCCGGGTTCAAGCCATTCTCCTGCTTCAGCCTCCTGAGCAGCTGAGACCGTAGGCATGTGCCA >> 17832343
17845524 << *----********************T******AG**G**A******GG**A*********AAG*****G****** << 17845454
17832344 >> CCACGTCCGGCTAATTTTTATATTTT-AGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAGATCTCC >> 17832417
17845453 << ****TC**T**********C******A******G*T***T*******TG***C******G*******-**T**A* << 17845380
17832418 >> TGACCTC-GTG-ATCCGCCTGCCTTGGCCTCCCACAGTGCTGGGATTACAGGTGTGAGCCACC >> 17832478
17845379 << *******T*C*C****T**G********A*****T*******A*****A*********A**** << 17845317
Statistics
Matches: 235 (81.60%), Mismatches: 42 (14.58%), Indels: 11 (3.82%)
ATpairs: 45.53%, CGpairs: 54.47%, GTpairs: 0.00%
:i = 17845475
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 35677773
highcenter: 35677821
testcenter: 35677797
im3: 35.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17847320 center: 35692718 interval size: 300 g: 3
Alignment explanation
Indices: 17845332--17845584,17847127--17847386 Loop: 1542 Score: 237
Left Length: 253 Right Length: 260 Average length: 256.5
3 most common centers (desc): 35692718 35692711 35692717
17845322 >> (LF) CTCACACCTA
17847396 << (RF) TCATAAGAAC
17845332 >> TAATCACAGCACTTTGGGAAGCCAAGGCGGGTGGATCCCCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACGT >> 17845406
17847386 << *****A*******G****AC***C***A*********T***********C****A******************T* << 17847312
17845407 >> GGTGAAATCCCT-TGTCTACTAAAAATACAAAAATTAGCT-GGCTGTGGTGGCACGTGCCTGAAGTCTCAGCTAC >> 17845479
17847311 << *******-*T**C*A*********G**************GT***-*******AC*T******A*T**G******* << 17847239
17845480 >> TGGGGAGGCAGAGGCGAGAGAATTGCTTGAACCCGGGA-G--GTGGA-G--G-GAGCCGAGATCTCACCATTGCA >> 17845547
17847238 << *A*******A*****T*******GT********A****T*GT*T**GA*AT*A****T*****ACAC***G**** << 17847164
17845548 >> CTCCAGCCTGGGCCACAGACACAGACTCCACCTCAAA >> 17845584
17847163 << ***A********AT*****CACA*******A****** << 17847127
Statistics
Matches: 209 (79.77%), Mismatches: 42 (16.03%), Indels: 11 (4.20%)
ATpairs: 44.02%, CGpairs: 55.98%, GTpairs: 0.00%
:i = 17847320
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 35692694
highcenter: 35692742
testcenter: 35692718
im3: 75.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17847869 center: 35692371 interval size: 300 g: 3
Alignment explanation
Indices: 17844263--17844556,17847813--17848106 Loop: 3256 Score: 305
Left Length: 294 Right Length: 294 Average length: 294.0
3 most common centers (desc): 35692369 35692371 35692370
17844253 >> (LF) ATAAAAGATC
17848116 << (RF) AGTCTGGTCC
17844263 >> TAGCTGGGCACGGTAGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGA >> 17844337
17848106 << ********AC****C*****GT******T********************T********T******C*****A*** << 17848032
17844338 >> GTTCGAGACCAACCAGGCCAATGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGC-AGACGTGGTGGT >> 17844411
17848031 << *T*A*******A**A***A**GT***********G********G*******-***--*G***G**CA*******G << 17847960
17844412 >> GGGCACTTGTAGTCCCAGCTCCTCGGGA-GGCTGAGGCAGGAGAATCGCTTTAACCCAGGAGGTGGAGGTTGCAT >> 17844485
17847959 << ******G**********T**TT**T***G***T-**T**T***A**A****C***********G*********GC << 17847886
17844486 >> TGAGCCAAGATCGCACCACTGCACTCCTGCCTGGGCGATAGAACAAGACT-G-TCTCAAAAAAAAAAAAAAAA >> 17844556
17847885 << ******C*****TAC************T*******A**G***C*C*****A*C*********C********** << 17847813
Statistics
Matches: 243 (81.54%), Mismatches: 47 (15.77%), Indels: 8 (2.68%)
ATpairs: 45.27%, CGpairs: 54.73%, GTpairs: 0.00%
:i = 17847869
tupleindex: 3
intervalindex: 1
matches_in_interval: 299.0000
lowcenter: 35692347
highcenter: 35692395
testcenter: 35692371
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17847997 center: 35683565 interval size: 300 g: 3
Alignment explanation
Indices: 17835461--17835756,17847819--17848104 Loop: 12062 Score: 290
Left Length: 296 Right Length: 286 Average length: 291.0
3 most common centers (desc): 35683565 35683575 35683574
17835451 >> (LF) CTATGTTCCG
17848114 << (RF) TCTGGTCCAT
17835461 >> GCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGA >> 17835535
17848104 << ******A************T***************************T****T***T************A***** << 17848030
17835536 >> TCAAGACCATCCTGGCTAACACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGACGTGG >> 17835610
17848029 << *AC******************A**A****************G*******-***--------*G****T*CA**** << 17847964
17835611 >> TGGTGGGCACCTGTAGTCCCAGCTACCCGGGA-GGCTTGAGGCAGGAGAATGGCGTGAACCTGGGAGACGGAGCT >> 17835684
17847963 << ***G*****************T***TA*T***G***TT**--**T***A**A**A******GT****C*****C* << 17847891
17835685 >> TGCAGTGAGCCAAGATCGCGCCACTACATTCCAGCCCAGGCGTCAGAGCAAGACTCTGTCTCAAAAAAAAAA >> 17835756
17847890 << ***G*******C*****TA******C**G*******AC**A*T******C*****AC**********C**** << 17847819
Statistics
Matches: 241 (81.14%), Mismatches: 44 (14.81%), Indels: 12 (4.04%)
ATpairs: 41.91%, CGpairs: 58.09%, GTpairs: 0.00%
:i = 17847997
tupleindex: 3
intervalindex: 1
matches_in_interval: 226.0000
lowcenter: 35683541
highcenter: 35683589
testcenter: 35683565
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17853601 center: 35697935 interval size: 300 g: 3
Alignment explanation
Indices: 17844278--17844500,17853429--17853659 Loop: 8928 Score: 142
Left Length: 223 Right Length: 231 Average length: 227.0
3 most common centers (desc): 35697929 35697937 35697935
17844268 >> (LF) GGGCACGGTA
17853669 << (RF) TGTACGGACC
17844278 >> GCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCAGGCGGA-TCACA-AGGTCAGGAGTTCGAGACCAAC >> 17844350
17853659 << *************T********************T***T*T*T***G**GAAC**GG********A*******C* << 17853585
17844352 >> -CAGGCCAATGTGGTGAAACCCTGTCTCTACTAAA-----AATACAAAAATTAGCAGAC-GTGGTGGTGGGCACT >> 17844418
17853584 << T*****-**G*GT*C**C*A***********TG*AAAAAA**T*T************CCA***T***GTA****G << 17853511
17844419 >> TGTAGTCCCAGCTC-CTCGGGAGGCTGAGGCAGGAGAATCGCTTTAACCCAGGAGGTGGAGGTTGCATTGAGCCA >> 17844492
17853510 << ******A******TT**-************AC****C**CT***C*C**A*******A**T*G*A**C******C << 17853437
17844493 >> AGATCGCA >> 17844500
17853436 << A***A*** << 17853429
Statistics
Matches: 173 (74.25%), Mismatches: 48 (20.60%), Indels: 12 (5.15%)
ATpairs: 45.09%, CGpairs: 54.91%, GTpairs: 0.00%
:i = 17853601
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 35697911
highcenter: 35697959
testcenter: 35697935
im3: 33.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17853959 center: 35698428 interval size: 300 g: 3
Alignment explanation
Indices: 17844299--17844556,17853867--17854132 Loop: 9310 Score: 162
Left Length: 258 Right Length: 266 Average length: 262.0
3 most common centers (desc): 35698428 35698429 35698431
17844289 >> (LF) TAGTCCCAGC
17854142 << (RF) GGTGTGGATA
17844299 >> ACTTTGGGAGGCCGAGGCAGGCGGATCACAAG-GTC-AGGAGTTCGAGACCAACCAGGCCAATGTGGTGAAACCC >> 17844371
17854132 << ************A****AC**A***CTC*AA*T*G*G*******A*******CACA**C***GT**GT*****A* << 17854058
17844372 >> TGTCTCTACTAAAAATACAAAAATTAGCAGACGTGGTGGTGGG-CA--CTTGTAGTCCCAGCTCCTCGGGAGGCT >> 17844443
17854057 << GT*C*****T********************C-***-*****TGT**AC*G*******A*****T*********** << 17853985
17844444 >> GAGGCAGGAGAATCGCTTTAACCCAGGAGGTGGAGGTTGCATTGAGCCAAGATCGCACCACTGCACTCCT-GCCT >> 17844517
17853984 << **T*AC****CG**T***T*C**AC*******T**TG****CC*****C****AGA**********C**GT**** << 17853910
17844518 >> GGGCGATAGAACAAGAC---T-GTCTCAAAAAAAAAAAAAAAA >> 17844556
17853909 << ***A**G***C*C****GGG*A*****CC************** << 17853867
Statistics
Matches: 198 (73.88%), Mismatches: 58 (21.64%), Indels: 12 (4.48%)
ATpairs: 47.98%, CGpairs: 52.02%, GTpairs: 0.00%
:i = 17853959
tupleindex: 3
intervalindex: 1
matches_in_interval: 372.0000
lowcenter: 35698404
highcenter: 35698452
testcenter: 35698428
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17854055 center: 35699474 interval size: 300 g: 3
Alignment explanation
Indices: 17845342--17845605,17853859--17854132 Loop: 8253 Score: 186
Left Length: 264 Right Length: 274 Average length: 269.0
3 most common centers (desc): 35699474 35699467 35699464
17845332 >> (LF) TAATCACAGC
17854142 << (RF) GGTGTGGATA
17845342 >> ACTTTGGGAAGCCAAGGCGGGTGGATCCCCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACGTGGTGAAATCC >> 17845416
17854132 << *********C**AC***A*******CTC*A****GG***C****A********AC***C****T**GT****GA* << 17854058
17845417 >> CTTGTCTACTAAAAATACAAAAATTAGCTGGCTGTGGTGGCACGTGCCTGAAGTCTCAGCTACTGGGGAGGCAGA >> 17845491
17854057 << *T*******T******************T**C*******T***T******A*************G*******A** << 17853983
17845492 >> GGCGAGAGAATTGCTTGAACCCGGGAGGTG--GA--G--GG-AGCCGAGATCTC-ACCATTGCACTCC-AGCCTG >> 17845557
17853982 << T*A*C***CG*GT***T*C**A********TT**GA*GT**C*********-**A****G*****C**G****** << 17853909
17845558 >> GGCCACAGACACAGACTCCAC--CTCAAAAAGAAAAGAAAAGGAAAAGAA >> 17845605
17853908 << **AC*****CGC****G**AACA***CC***T****T****TT****T** << 17853859
Statistics
Matches: 207 (75.27%), Mismatches: 56 (20.36%), Indels: 12 (4.36%)
ATpairs: 48.31%, CGpairs: 51.69%, GTpairs: 0.00%
:i = 17854055
tupleindex: 3
intervalindex: 1
matches_in_interval: 105.0000
lowcenter: 35699450
highcenter: 35699498
testcenter: 35699474
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17856732 center: 35702117 interval size: 300 g: 3
Alignment explanation
Indices: 17845378--17845566,17856544--17856739 Loop: 10977 Score: 136
Left Length: 189 Right Length: 196 Average length: 192.5
3 most common centers (desc): 35702117 35702110 35702116
17845368 >> (LF) CCCCTGAGGT
17856749 << (RF) GTTACGTCGG
17845378 >> CAGAAGTTCGAGACCAGCCTGGCCAACGTGGTGAAATCCCTTGTCTACTAAAAATACAAAAATTAG-CTGGCTGT >> 17845451
17856739 << ***C************G***A*C****T********G***T*G*****T**********C******A*T**-*** << 17856666
17845452 >> GGTGGCACGTGCCTGAAGTCTCAGCTACTGGGGAGGCAGAGGCGAGAGAATTGCTTGAACCC-GGG---AG-G-T >> 17845520
17856665 << ******AAT******A****G***T****G**T*T**A****A*C***C**GT*********T***CCG**T*C* << 17856591
17845521 >> GG-AGGGAGCCGAGATCTCACCATTGCACTCCAGCCTGGGCCACAGA >> 17845566
17856590 << A*G**A*C***TAT**ACA*A**G*G***************T***** << 17856544
Statistics
Matches: 149 (75.63%), Mismatches: 39 (19.80%), Indels: 9 (4.57%)
ATpairs: 45.64%, CGpairs: 54.36%, GTpairs: 0.00%
:i = 17856732
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35702093
highcenter: 35702141
testcenter: 35702117
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17857959 center: 35705954 interval size: 300 g: 3
Alignment explanation
Indices: 17847808--17848108,17857846--17858150 Loop: 9737 Score: 360
Left Length: 301 Right Length: 305 Average length: 303.0
3 most common centers (desc): 35705958 35705954 35705957
17847798 >> (LF) GAATTCTTTT
17858160 << (RF) ATAGTTATGG
17847808 >> TTTTTTTTTTTTTTTCTTTTTGAGACCAAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGC >> 17847882
17858150 << ***************A**********TC*****A*******AC*********************C*******T** << 17858076
17847883 >> TCACGGCAACCTCCGCCTCCTGGGTTCAAGCAATACTCTTGTCTT-GCCGTCCTGATTAGTTGGGACTACAGGTG >> 17847956
17858075 << ****A****C****T*****G*******G**G**A******G**GT***-***G**C*C*G************G* << 17858002
17847957 >> CCCGCCACCACACCTGGCTGATTTT----ATTTTTGGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTC >> 17848027
17858001 << ********AC****G****T*****AACA******T*******************C******************* << 17857927
17848028 >> AATCTCCAGACCTCGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCA >> 17848102
17857926 << A******A************GT**GTAT*G********A******************************AC***C << 17857852
17848103 >> GCTACC >> 17848108
17857851 << **G*** << 17857846
Statistics
Matches: 258 (84.31%), Mismatches: 42 (13.73%), Indels: 6 (1.96%)
ATpairs: 44.96%, CGpairs: 55.04%, GTpairs: 0.00%
:i = 17857959
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35705930
highcenter: 35705978
testcenter: 35705954
im3: 82.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17858041 center: 35705259 interval size: 300 g: 3
Alignment explanation
Indices: 17847119--17847388,17857872--17858140 Loop: 10483 Score: 276
Left Length: 270 Right Length: 269 Average length: 269.5
3 most common centers (desc): 35705259 35705258 35705260
17847109 >> (LF) TAATTTAATA
17858150 << (RF) AAAAAAAAAA
17847119 >> TTATTTTATTTGAGATGGAGTCACACTCTGTTACCCAGGCTAGAGTGCAGTGGCACAATCTCTGCTCACTACAGC >> 17847193
17858140 << **A****A*******GT*****AAC*******C********C************CAC*****T*******C**TC << 17858066
17847194 >> CTCTGCTTCCCAGGTTCAAGTGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCAC >> 17847268
17858065 << ***GT*G****C******G*GG*********************C***C*******G*******CGG*C****AC* << 17857991
17847269 >> GCCTGGCTAATTTTT-GTATGTTTAGTAGAAACAGTGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGAC >> 17847342
17857990 << T**G***********A****A*********C**C*C********C****T******T*******A*A******** << 17857916
17847343 >> CTCAGGTGATCCACCCACCTCGGCCACCCAGAGTGCTGAGATTACA >> 17847388
17857915 << ***-*-***********AT******A***AT*******C******* << 17857872
Statistics
Matches: 219 (80.81%), Mismatches: 49 (18.08%), Indels: 3 (1.11%)
ATpairs: 46.12%, CGpairs: 53.88%, GTpairs: 0.00%
:i = 17858041
tupleindex: 3
intervalindex: 1
matches_in_interval: 121.0000
lowcenter: 35705235
highcenter: 35705283
testcenter: 35705259
im3: 44.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17858094 center: 35712015 interval size: 300 g: 3
Alignment explanation
Indices: 17853862--17854132,17857884--17858150 Loop: 3751 Score: 197
Left Length: 271 Right Length: 267 Average length: 269.0
3 most common centers (desc): 35712015 35712014 35712012
17853852 >> (LF) TTTTGGGTTT
17858160 << (RF) ATAGTTATGG
17853862 >> TTTTTTTTTTTTTTTTTTTCCGAGACAAGGGGTCTCGCTCTGTCACCCAGGCTGGGCGTGCAGTGGTAGAATCTC >> 17853936
17858150 << *******************AA******-*T*-***A*******AC**********T-*********GCAC***** << 17858079
17853937 >> GGCTCCCTGCAGTCTTCACCTCCCAGGCTTAAGTGAGCCTCCCACTTCAGCCTCCCGAGTAGCTGAGACTACAGG >> 17854011
17858078 << T****T*****TC**G********C**A*G*G*GG*AA***AAC*G**************C****C********* << 17858004
17854012 >> CATGTGTCACCACACCCTGCTAATTTTT-GTATTTTTTGTAGACATGGAGTTTCTGCATGTTGCCCACACTGGTC >> 17854085
17858003 << *CGGG*G***AC*****C**********A********T*****C*G**C*****TG*C****TC***CCT***** << 17857929
17854086 >> TCAAACTCCTGGGCTCAAGCTCTCCACCCACCTCAGCCTCCCAAAGT >> 17854132
17857928 << **A*A******TG***CA*T**-*-*****AT**C*******A**** << 17857884
Statistics
Matches: 205 (75.37%), Mismatches: 61 (22.43%), Indels: 6 (2.21%)
ATpairs: 47.80%, CGpairs: 52.20%, GTpairs: 0.00%
:i = 17858094
tupleindex: 3
intervalindex: 1
matches_in_interval: 109.0000
lowcenter: 35711991
highcenter: 35712039
testcenter: 35712015
im3: 49.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17858102 center: 35714658 interval size: 300 g: 3
Alignment explanation
Indices: 17856507--17856739,17857918--17858149 Loop: 1178 Score: 190
Left Length: 233 Right Length: 232 Average length: 232.5
3 most common centers (desc): 35714658 35714657 35714656
17856497 >> (LF) GGTTGTTGGG
17858159 << (RF) TAGTTATGGA
17856507 >> TTTTTTGTTGTTTGTTTTCTGAGACAAGGTCTCGCTCTCTGTTGCCCAGGCTGGAGTGGAGTGATACAATTATGG >> 17856581
17858149 << ******A**A***A****A*******CT****A*****--******************G****CGCAC**GAGT* << 17858077
17856582 >> CCCACTGCAACCTCTGCCCCCTGGGTTCAAGTGATCCTCCCACCTCAGCTTTCCGAGTATCTGGGACTACAGGCA >> 17856656
17858076 << *A********C***GT**A**G*******G*GG**A***AAC*******G*G******CC**************C << 17858002
17856657 >> TAAGCCACCACACCTGACTAATTCTT-GTATTTTTTGTAGAGATGGGGTTTCACCATGTT-GCCAAGGGTGGTCT >> 17856729
17858001 << GGG*****AC****G*C******A**A********T*******G***********C****T****-**T****** << 17857928
17856730 >> CGAACTCCTG >> 17856739
17857927 << *A*A****** << 17857918
Statistics
Matches: 181 (77.02%), Mismatches: 49 (20.85%), Indels: 5 (2.13%)
ATpairs: 48.62%, CGpairs: 51.38%, GTpairs: 0.00%
:i = 17858102
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 35714634
highcenter: 35714682
testcenter: 35714658
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17858969 center: 35717071 interval size: 300 g: 3
Alignment explanation
Indices: 17857865--17858149,17858922--17859207 Loop: 772 Score: 308
Left Length: 285 Right Length: 286 Average length: 285.5
3 most common centers (desc): 35717071 35717070 35717072
17857855 >> (LF) GCACGGTGGC
17859217 << (RF) AGATAGAATT
17857865 >> TCACACCTGTAATCCCAGCACTTAGGGAGGCCGATATGGGTGGATCAC--GAGGTCAGGAGATAGAGACCATCCT >> 17857937
17859207 << ***********************A****T**A**CC****GT******AA***T*******A*GT****A*C*** << 17859133
17857938 >> GGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCAGTGGCGGGCGCCTGTAGTC >> 17858012
17859132 << ***G**A*A**GT*******T*********************-*********GAAC*****T**A*******T** << 17859059
17858013 >> CCAGCCACTCGGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATCACG >> 17858087
17859058 << *****A******************C******G**A*******T*****GGT*TC***********GT****AC** << 17858984
17858088 >> CCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA >> 17858149
17858983 << ****T****************CG*****AC*******************C*C***A***A** << 17858922
Statistics
Matches: 235 (81.88%), Mismatches: 49 (17.07%), Indels: 3 (1.05%)
ATpairs: 47.23%, CGpairs: 52.77%, GTpairs: 0.00%
:i = 17858969
tupleindex: 3
intervalindex: 1
matches_in_interval: 133.0000
lowcenter: 35717047
highcenter: 35717095
testcenter: 35717071
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17858994 center: 35703484 interval size: 300 g: 3
Alignment explanation
Indices: 17844285--17844556,17858926--17859202 Loop: 14369 Score: 294
Left Length: 272 Right Length: 277 Average length: 274.5
3 most common centers (desc): 35703484 35703485 35703487
17844275 >> (LF) GTAGCTCATG
17859212 << (RF) GAATTAGTGT
17844285 >> CCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAG-G-TCAGGAGTTCGAGACCAACCAGGCCA >> 17844357
17859202 << ******T****************T**A****AC***T******AA*T*T**********T****A*C**A***** << 17859128
17844358 >> ATGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCAGA-CGTGGTGGTGGGCACTTGTAGTCCCAGCT >> 17844431
17859127 << **T***GT******GT**************************G*CC*A******GT**AC*G****T******** << 17859053
17844432 >> CCTCGGGAGGCTGAGGCAGGAGAATCGCTTTAACCCAGGAGGTGGAGGTTGCATTGAGCCAAGATCGCACCACTG >> 17844506
17859052 << T*****************************C***********GGT*T******C***********A**C****T* << 17858978
17844507 >> CACTCCTGCCTGGGCGATAGAACAAGACT--GTCTCAAAAAAAAAAAAAAAA >> 17844556
17858977 << ******T*********GG***CAC*****GA************C*C***A** << 17858926
Statistics
Matches: 227 (81.95%), Mismatches: 45 (16.25%), Indels: 5 (1.81%)
ATpairs: 46.70%, CGpairs: 53.30%, GTpairs: 0.00%
:i = 17858994
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 35703460
highcenter: 35703508
testcenter: 35703484
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17859060 center: 35717488 interval size: 160 g: 2
Alignment explanation
Indices: 17858420--17858476,17859012--17859068 Loop: 535 Score: 57
Left Length: 57 Right Length: 57 Average length: 57.0
3 most common centers (desc): 35717488 35717487 0
17858410 >> (LF) AGTGACTCAC
17859078 << (RF) CCACCGTCCA
17858420 >> GCCTGTAATCCCAGC-ACTTTGGGAGGCGGAGATGGGAGGATCATTTGAGCCCAGGAG >> 17858476
17859068 << ***************A***G-*******A***CGT****T***CG****T******** << 17859012
Statistics
Matches: 47 (81.03%), Mismatches: 9 (15.52%), Indels: 2 (3.45%)
ATpairs: 38.30%, CGpairs: 61.70%, GTpairs: 0.00%
:i = 17859060
tupleindex: 2
intervalindex: 2
matches_in_interval: 71.0000
lowcenter: 35717470
highcenter: 35717506
testcenter: 35717488
im3: 22.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17859096 center: 35704530 interval size: 300 g: 3
Alignment explanation
Indices: 17845323--17845595,17858929--17859207 Loop: 13333 Score: 252
Left Length: 273 Right Length: 279 Average length: 276.0
3 most common centers (desc): 35704530 35704523 35704524
17845313 >> (LF) GCATGGTGAC
17859217 << (RF) AGATAGAATT
17845323 >> TCACACCTATAATCACAGCACTTTGGGAAGCCAAGGCGGGTGGATCCCCTGAGGTCAGAAGTTCGAGACCAGCCT >> 17845397
17859207 << ********C*****G****************AC***A***GT****T*A****T****C*****T****A***** << 17859133
17845398 >> GGCCAACGTGGTGAAATCCCTTGTCTACTAAAAATACAAAAATTAGCTGG-CTGTGGTGGCACGTGCCTGAAGTC >> 17845471
17859132 << ******AT***GT***G***T*G************************G**C**-********C*******A*T** << 17859059
17845472 >> TCAGCTACTGGGGAGGCAGAGGCGAGAGAATTGCTTGAACCCGGGAGGT----G--G-AGGGAGCCGAGATCTCA >> 17845539
17859058 << G********G*******A*****TC******G**********T*****GGTTT*AA*G**A*****T****AC*C << 17858984
17845540 >> CCATTGCACTCCAGCCTGGGCCACAGACACAGACTCCACCTCAAAAAGAAAAGAAA >> 17845595
17858983 << ***GT****************CG****CAC******ACA********-**C***** << 17858929
Statistics
Matches: 223 (79.36%), Mismatches: 48 (17.08%), Indels: 10 (3.56%)
ATpairs: 47.09%, CGpairs: 52.91%, GTpairs: 0.00%
:i = 17859096
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35704506
highcenter: 35704554
testcenter: 35704530
im3: 51.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17859184 center: 35717623 interval size: 160 g: 2
Alignment explanation
Indices: 17858416--17858484,17859139--17859207 Loop: 654 Score: 93
Left Length: 69 Right Length: 69 Average length: 69.0
3 most common centers (desc): 35717623 0 0
17858406 >> (LF) GCGCAGTGAC
17859217 << (RF) AGATAGAATT
17858416 >> TCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGATGGGAGGATCATTTGAGCCCAGGAGTTCAAGAC >> 17858484
17859207 << ****T***********************T**A***C****GT*****G*****TA************** << 17859139
Statistics
Matches: 60 (86.96%), Mismatches: 9 (13.04%), Indels: 0 (0.00%)
ATpairs: 46.67%, CGpairs: 53.33%, GTpairs: 0.00%
:i = 17859184
tupleindex: 2
intervalindex: 2
matches_in_interval: 177.0000
lowcenter: 35717605
highcenter: 35717641
testcenter: 35717623
im3: 29.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17862364 center: 35720465 interval size: 300 g: 3
Alignment explanation
Indices: 17857841--17858151,17862314--17862622 Loop: 4162 Score: 428
Left Length: 311 Right Length: 309 Average length: 310.0
3 most common centers (desc): 35720465 35720463 35720464
17857831 >> (LF) TGGAAAAATG
17862632 << (RF) AATTCTACGT
17857841 >> GTACTGGTGGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGCCGATATGGGTGGATCACGAG >> 17857915
17862622 << *******-*-*****AC*T****A****C******************A**********CCGT**GT********* << 17862550
17857916 >> GTCAGGAGATAGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGT >> 17857990
17862549 << **********G******************************A*************A********G*******T*G << 17862475
17857991 >> GCAGTGGCGGGCGCCTGTAGTCCCAGCCACTCGGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAGGTGGAG >> 17858065
17862474 << *AC***TA***T***************AC*****************C****************A******G**** << 17862400
17858066 >> CTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAA >> 17858140
17862399 << ************G******G**********************AC*****G*C******G****A*********** << 17862325
17858141 >> AAAAAAAAAAG >> 17858151
17862324 << *********** << 17862314
Statistics
Matches: 273 (87.78%), Mismatches: 36 (11.58%), Indels: 2 (0.64%)
ATpairs: 44.32%, CGpairs: 55.68%, GTpairs: 0.00%
:i = 17862364
tupleindex: 3
intervalindex: 1
matches_in_interval: 407.0000
lowcenter: 35720441
highcenter: 35720489
testcenter: 35720465
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17862839 center: 35721279 interval size: 300 g: 3
Alignment explanation
Indices: 17858415--17858531,17862746--17862864 Loop: 4214 Score: 90
Left Length: 117 Right Length: 119 Average length: 118.0
3 most common centers (desc): 35721279 35721277 35721281
17858405 >> (LF) GGCGCAGTGA
17862874 << (RF) CTACGACGCC
17858415 >> CTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGATGGGAGGATCATTTGAGCCCAGGAGTTCAAGACACCAA >> 17858489
17862864 << *****T***************T**********GT**CGT********AGG*********G****AC****-*-*C << 17862792
17858490 >> CCTGAGCAAGA-TGT--CTCTAT-TAAAAAAAAAAAAAGGAAAAAG >> 17858531
17862791 << *********A*C**TTT*G****G*GAA**********TT****** << 17862746
Statistics
Matches: 93 (76.86%), Mismatches: 22 (18.18%), Indels: 6 (4.96%)
ATpairs: 54.84%, CGpairs: 45.16%, GTpairs: 0.00%
:i = 17862839
tupleindex: 3
intervalindex: 1
matches_in_interval: 222.0000
lowcenter: 35721255
highcenter: 35721303
testcenter: 35721279
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17866405 center: 35719942 interval size: 300 g: 3
Alignment explanation
Indices: 17853430--17853660,17866282--17866515 Loop: 12621 Score: 160
Left Length: 231 Right Length: 234 Average length: 232.5
3 most common centers (desc): 35719942 35719945 35719946
17853420 >> (LF) CAGGCTCACT
17866525 << (RF) CACGTCACCG
17853430 >> GCAATCACGGCTCACTGAAGCTTCAACCTCCTAGGCTCAAGTCATCCTCCCACCTCAGCCTCCCAGTTAGCTGGA >> 17853504
17866515 << **C***A**********G*T*G**AC*****G***A*****GT***T*****A-************T***A*T*C << 17866442
17853505 >> ACTACAGGTGCATGCCATCAC-AC-CCTGC-TAATTTTTTTTTTAAAAA-ATGTGTAG-AGACA-GGATCTCCCT >> 17853573
17866441 << *A******--*****-*G***G**C*****G*************AAAACA**A*A***A***C*A**CCA*A*T* << 17866370
17853574 >> GC-GTTG-CCTGTGCTGGTCTCAAACTCCTGGGCTCAAG-GAGTCCTCTTTCCTTGGCCTCCCAAAGTGCTGGGA >> 17853645
17866369 << GTA****C**T*-*********C********TG******A**-***C*G*C*******C**************** << 17866297
17853646 >> TTACAGGCATGAGCC >> 17853660
17866296 << ********C****** << 17866282
Statistics
Matches: 182 (75.83%), Mismatches: 43 (17.92%), Indels: 15 (6.25%)
ATpairs: 47.25%, CGpairs: 52.75%, GTpairs: 0.00%
:i = 17866405
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 35719918
highcenter: 35719966
testcenter: 35719942
im3: 64.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17866531 center: 35718895 interval size: 300 g: 3
Alignment explanation
Indices: 17852330--17852597,17866292--17866565 Loop: 13694 Score: 139
Left Length: 268 Right Length: 274 Average length: 271.0
3 most common centers (desc): 35718895 35718887 35718894
17852320 >> (LF) TGTGAATATC
17866575 << (RF) GGGAAAAAAA
17852330 >> TTTTTGATTCAGGGTCTGGTTCTGTCACCTAGGCTGGAGTG--CAGTGACATGATCAAAGCTTCACTGCAGCCTC >> 17852402
17866565 << *******CT*C*T****GTGG********G***********AC*****C*CG****AGC***-*******T**** << 17866492
17852403 >> AAAATCCT-GGTCTCAAGTCATCCTCCTACCCCAGCCTCCCAAGTAGCTACGACCACAGGCACACATCACCACAC >> 17852476
17866491 << ACGG***GT***-*****GT***T***G*AA*-*********CT***A**C**AA*******AC**G******C* << 17866419
17852477 >> CCAGCTAATTTTTCGAAGTTTT-TATTATGAC-AGAG-TCTCG---C-T-ATGTTACCCAGGCTGGTCTCAAACC >> 17852543
17866418 << *ACG*********AAAAA****C****A*A*CA****T*CCC*AAA*T*G*****CC*************C***A << 17866344
17852544 >> CCTGACCTCAAGTGATCCCCCCACTGTCTTGGCCTCC-AAAGTGCTGAGATTACA >> 17852597
17866343 << ******************C**---**G******C***G*********C******* << 17866292
Statistics
Matches: 203 (72.50%), Mismatches: 59 (21.07%), Indels: 18 (6.43%)
ATpairs: 49.75%, CGpairs: 50.25%, GTpairs: 0.00%
:i = 17866531
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 35718871
highcenter: 35718919
testcenter: 35718895
im3: 33.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17866535 center: 35720445 interval size: 300 g: 3
Alignment explanation
Indices: 17853871--17854132,17866304--17866572 Loop: 12171 Score: 179
Left Length: 262 Right Length: 269 Average length: 265.5
3 most common centers (desc): 35720436 35720445 35720444
17853861 >> (LF) TTTTTTTTTT
17866582 << (RF) TATGACGGGG
17853871 >> TTTTTTTTTTCCGAGACAAGGGGTCTCGCTCTGTCACCCAGGCTGG-GCGTGCAGTGGTAGAATCTCGGCTCCCT >> 17853944
17866572 << **********AA*****--**T*****T*G****************T*A*********GCGC**********T** << 17866500
17853945 >> GCAGTCTTCACCTCCCAGGCTTAAGTGAGCCTCCCACTTCAGCCTCCCGAG-TAGCTGAGACTACAGGCATGTGT >> 17854018
17866499 << ***TG**GAC*********A*G***GT*A*T*****-***********-**T***A*TC**A**********GTG << 17866427
17854019 >> CACCACACCCTGC-TAATTTTT---------GTATTTTTTGTAGACATGGAGTTTCTGCATGTTGCCCACACTGG >> 17854083
17866426 << ******C**-***G********AAAAAAAAA********T*****C****C*****TA*******C***CC**** << 17866353
17854084 >> TCTCAAACTCCTGGGCTCAAGCTCTCCACCCACCTCAGCCTCCCAAAGT >> 17854132
17866352 << ****C********TG******ACT***C**AC***AC**C********* << 17866304
Statistics
Matches: 207 (75.55%), Mismatches: 50 (18.25%), Indels: 17 (6.20%)
ATpairs: 47.83%, CGpairs: 52.17%, GTpairs: 0.00%
:i = 17866535
tupleindex: 3
intervalindex: 1
matches_in_interval: 147.0000
lowcenter: 35720421
highcenter: 35720469
testcenter: 35720445
im3: 46.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17866567 center: 35728894 interval size: 600 g: 3
Alignment explanation
Indices: 17862324--17862625,17866261--17866572 Loop: 3635 Score: 303
Left Length: 302 Right Length: 312 Average length: 307.0
3 most common centers (desc): 35728885 35728887 35728894
17862314 >> (LF) CTTTTTTTTT
17866582 << (RF) TATGACGGGG
17862324 >> TTTTTTTTTTTTAAGACGGAGTCTCGGTCTGTCACCCAGGCTGGAGTG--CAGTGGCGGGATCTCGGCTCACTGC >> 17862396
17866572 << ************C************TGG********************AC********G**************** << 17866498
17862397 >> AAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGC-AGCTGGGACTACAGGCTCCCATCA >> 17862470
17866497 << **G***A**************T**T**GT***GTA-**********-**TA**A*T***A*******TAC**G** << 17866425
17862471 >> CCACGCTCGGCTAAGTTTTT--------GTAATTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCT >> 17862537
17866424 << ******GA*G****A*****AAAAAAAA***A************AC********A*T****C******G****** << 17866350
17862538 >> CGATCTCCTGACCTC--GTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCAC >> 17862610
17866349 << ***T***********TT******G********A***C****************************C****GGT** << 17866275
17862611 >> CCGGCCCAGTACTGC >> 17862625
17866274 << *A****T*-****** << 17866261
Statistics
Matches: 256 (81.27%), Mismatches: 43 (13.65%), Indels: 16 (5.08%)
ATpairs: 44.92%, CGpairs: 55.08%, GTpairs: 0.00%
:i = 17866567
tupleindex: 3
intervalindex: 2
matches_in_interval: 235.0000
lowcenter: 35728860
highcenter: 35728928
testcenter: 35728894
im3: 50.0000
frequent_center_ratio*rnkp: 41.4200
Found at i: 17868040 center: 35730431 interval size: 300 g: 3
Alignment explanation
Indices: 17862323--17862616,17867816--17868105 Loop: 5199 Score: 286
Left Length: 294 Right Length: 290 Average length: 292.0
3 most common centers (desc): 35730431 35730434 35730432
17862313 >> (LF) TCTTTTTTTT
17868115 << (RF) TCTAATACTT
17862323 >> TTTTTTTTTTTTTAAGACGGAGTCTCGGTCTGTCACCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCA >> 17862397
17868105 << *******G*****A*G*-**-****-*G*****AC*****************T***TGT**************** << 17868034
17862398 >> AGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCTCCCATCACC >> 17862472
17868033 << CG**********AC******T**T******A*****************A*T******A*******TACACG**** << 17867959
17862473 >> ACGCTCGGCTAAGTTTTTGTAATTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTG >> 17862547
17867958 << **-*-*T*****-********A************AC**********TGT**C*A****G*********T**C*** << 17867887
17862548 >> ACCTC--GTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCC >> 17862616
17867886 << C****TT******GT*A*********************T*T*********A****C****G*AC***T*** << 17867816
Statistics
Matches: 238 (80.41%), Mismatches: 50 (16.89%), Indels: 8 (2.70%)
ATpairs: 43.70%, CGpairs: 56.30%, GTpairs: 0.00%
:i = 17868040
tupleindex: 3
intervalindex: 1
matches_in_interval: 124.0000
lowcenter: 35730407
highcenter: 35730455
testcenter: 35730431
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17868040 center: 35724624 interval size: 300 g: 3
Alignment explanation
Indices: 17856543--17856743,17867883--17868081 Loop: 11139 Score: 218
Left Length: 201 Right Length: 199 Average length: 200.0
3 most common centers (desc): 35724624 35724626 35724625
17856533 >> (LF) AGGTCTCGCT
17868091 << (RF) TGTCCCAGAC
17856543 >> CTCTGTTGCCCAGGCTGGAGTGGAGTGATACAATTATGGCCCACTGCAACCTCTGCCCCCTGGGTTCAAGTGATC >> 17856617
17868081 << **********************G**T*CG*****GAG***A*******C****G***A************GT**A << 17868007
17856618 >> CTCCCACCTCAGCTTTCCGAGTATCTGGGACTACAGGCATAAGCCACCACACCTGACTAATTCTTGTATTTTTTG >> 17856692
17868006 << ***AAC*******G*G*******T******A*********CA********-**T*-******A**********T* << 17867934
17856693 >> TAGAGATGGGGTTTCACCATGTTGCCAAGGGTGGTCTCGAACTCCTGGGCT >> 17856743
17867933 << *******************GT***CAG***G************C****G** << 17867883
Statistics
Matches: 165 (82.09%), Mismatches: 34 (16.92%), Indels: 2 (1.00%)
ATpairs: 45.45%, CGpairs: 54.55%, GTpairs: 0.00%
:i = 17868040
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 35724600
highcenter: 35724648
testcenter: 35724624
im3: 50.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17868044 center: 35727037 interval size: 300 g: 3
Alignment explanation
Indices: 17858921--17859207,17867832--17868113 Loop: 8624 Score: 329
Left Length: 287 Right Length: 282 Average length: 284.5
3 most common centers (desc): 35727037 35727039 35727034
17858911 >> (LF) TTTAAAATTT
17868123 << (RF) TGTTTAAGTC
17858921 >> ATTATTTATTTCTCTTTTTTTGAGACAGAGTCTCACTCTGGCGCCCAGGCTGGAGTGCTGTGGCGCAATCTTGGC >> 17858995
17868113 << *****CT****A*A*G*****A*--***C****C-*****AA****************T*T***T******G*** << 17868042
17858996 >> TCACTGCAACTTTGGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCAC >> 17859070
17868041 << ********C*G*GG*****************T******A*******************T***************A << 17867967
17859071 >> CTGCCACCAAGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATATTGGCCAGGCTAGTCTTGA >> 17859145
17867966 << C********--***T**********************************GT***G*****A******C****G** << 17867894
17859146 >> ACTCCTGATCTCAAGTGATCTGCCCACCTCAGCTTCCCAAAGTGCTGGGATTACAGGTGTGA >> 17859207
17867893 << ***C***CG***********GT*AAC****C**G***********T*T************** << 17867832
Statistics
Matches: 240 (83.62%), Mismatches: 42 (14.63%), Indels: 5 (1.74%)
ATpairs: 49.17%, CGpairs: 50.83%, GTpairs: 0.00%
:i = 17868044
tupleindex: 3
intervalindex: 1
matches_in_interval: 147.0000
lowcenter: 35727013
highcenter: 35727061
testcenter: 35727037
im3: 70.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17868050 center: 35721981 interval size: 300 g: 3
Alignment explanation
Indices: 17853891--17854132,17867851--17868088 Loop: 13718 Score: 216
Left Length: 242 Right Length: 238 Average length: 240.0
3 most common centers (desc): 35721981 35721983 35721980
17853881 >> (LF) CCGAGACAAG
17868098 << (RF) GAAAAAATGT
17853891 >> GGGTCTCGCTCTGTCACCCAGGCTGGGCGTGCAGTGGTAGAATCTCGGCTCCCTGCAGTCTTCACCTCCCAGGCT >> 17853965
17868088 << ******-*******AC**********T-******T**G*G***********T******G**G*C*****AC**A* << 17868016
17853966 >> TAAGTGAGCCTCCCACTTCAGCCTCCCGAGTAGCTGAGACTACAGGCATGTGTCACCACACCCTGCTAATTTTTG >> 17854040
17868015 << G***GT*AA***AAC*G***************T***C**A************G******-**T-*********** << 17867943
17854041 >> TATTTTTTGTAGACATGGAGTTTCTGCATGTTGCCCACACTGGTCTCAAACTCCTGGGCTCAAGCTCTCCACCCA >> 17854115
17867942 << *******T*****C****C*****TG**GT***CA**CC********C****C****G******ACT*****AAC << 17867868
17854116 >> CCTCAGCCTCCCAAAGT >> 17854132
17867867 << ****C************ << 17867851
Statistics
Matches: 190 (78.51%), Mismatches: 48 (19.83%), Indels: 4 (1.65%)
ATpairs: 44.74%, CGpairs: 55.26%, GTpairs: 0.00%
:i = 17868050
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 35721957
highcenter: 35722005
testcenter: 35721981
im3: 38.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869582 center: 35727684 interval size: 300 g: 3
Alignment explanation
Indices: 17858098--17858144,17869538--17869586 Loop: 11393 Score: 59
Left Length: 47 Right Length: 49 Average length: 48.0
3 most common centers (desc): 35727684 35727682 35727683
17858088 >> (LF) CCACTGCACT
17869596 << (RF) CTCAAGGTTT
17858098 >> CCAGCCTGGGCAACAGAGCAAGAC-TCTGTCT-CAAAAAAAAAAAAAAA >> 17858144
17869586 << ***************G********G***G***T*G*****AG******* << 17869538
Statistics
Matches: 42 (85.71%), Mismatches: 5 (10.20%), Indels: 2 (4.08%)
ATpairs: 59.52%, CGpairs: 40.48%, GTpairs: 0.00%
:i = 17869582
tupleindex: 3
intervalindex: 1
matches_in_interval: 133.0000
lowcenter: 35727660
highcenter: 35727708
testcenter: 35727684
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869608 center: 35737486 interval size: 300 g: 3
Alignment explanation
Indices: 17867813--17868091,17869395--17869672 Loop: 1303 Score: 210
Left Length: 279 Right Length: 278 Average length: 278.5
3 most common centers (desc): 35737486 35737487 35737485
17867803 >> (LF) GAAACGGTTA
17869682 << (RF) TAAAATGTTA
17867813 >> TGAGGCTGGGCACGGTGGCTCACACCTGTAATCTCTGCACTTTGGGAGGCCGAGGCAAGTGGATCACTTGAGGCC >> 17867887
17869672 << *****TGT****A********************G*T*C****T**-******A****C*C*A**********AA* << 17869599
17867888 >> AGCAGTTCGAGACCAGCCTGACCAATGTGGTGAAACCCCATCTCTACTAAAAAT-ACAAAAATTAGCTGGGTG-G >> 17867960
17869598 << **C*****G*T*********CC***GTGT*GT*C***A*-*******G******G*T**********GT**GTA* << 17869525
17867961 >> TGGCACATGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAAGAGAATTGCTTGAACCCAGGAGGCGGAGGCTG >> 17868035
17869524 << ***CACG-******A*******G****A*T************C***A******-**C*TT**T**TAG******* << 17869452
17868036 >> CAGTGAGCCGAGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGCA-GACCCTGT >> 17868091
17869451 << ********ATAT**G*GT**T*********CT*********A******T******** << 17869395
Statistics
Matches: 214 (75.89%), Mismatches: 61 (21.63%), Indels: 7 (2.48%)
ATpairs: 43.93%, CGpairs: 56.07%, GTpairs: 0.00%
:i = 17869608
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 35737462
highcenter: 35737510
testcenter: 35737486
im3: 54.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869608 center: 35735939 interval size: 300 g: 3
Alignment explanation
Indices: 17866279--17866567,17869385--17869659 Loop: 2817 Score: 173
Left Length: 289 Right Length: 275 Average length: 282.0
3 most common centers (desc): 35735950 35735939 35735938
17866269 >> (LF) GGCCAGGTTG
17869669 << (RF) CCTGTCCGTA
17866279 >> GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGACGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGAC >> 17866353
17869659 << **********T*************C****T**-*C***CA******C*A**********A**********G*T** << 17869586
17866354 >> CAGCCTGGCCAACATGATGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAATTAGGCAGGCGTGGTGGT >> 17866428
17869585 << ********C*****G-*-*G**CT**-*****-***G-----******AG***********G*****T**AC*** << 17869520
17866429 >> GCATGCCTGTAATCCTAACTATCTGGGAGGCTGAATG-GGATGATTGCTTGAACCTGGGAGGCAGAGGTTGCAGT >> 17866502
17869519 << **--******A****G*C***GA**T********CCGT***CA******-**C*TTT*T**TAG****G****** << 17869448
17866503 >> GAGCCGAGATCGCGCCACTGCACACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAAAAA >> 17866567
17869447 << ****ATAT*****T*********A*-*C*-******GT*A**T*GT****G*A*******G**** << 17869385
Statistics
Matches: 215 (74.14%), Mismatches: 59 (20.34%), Indels: 16 (5.52%)
ATpairs: 46.51%, CGpairs: 53.49%, GTpairs: 0.00%
:i = 17869608
tupleindex: 3
intervalindex: 1
matches_in_interval: 136.0000
lowcenter: 35735915
highcenter: 35735963
testcenter: 35735939
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869722 center: 35727827 interval size: 300 g: 3
Alignment explanation
Indices: 17857874--17858145,17869682--17869956 Loop: 11536 Score: 374
Left Length: 272 Right Length: 275 Average length: 273.5
3 most common centers (desc): 35727827 35727830 0
17857864 >> (LF) CTCACACCTG
17869966 << (RF) AAAATGTTTA
17857874 >> TAATCCCAGCACTTAGGGAGGCCGATATGGGTGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG >> 17857948
17869956 << **************A*******A**CC*************************GT***********T********* << 17869882
17857949 >> TGAAACCCCGTCTCTACTAAAAATACAAAAAA---TTAGCCGGGTGCAGTGGCGGGCGCCTGTAGTCCCAGCCAC >> 17858020
17869881 << ********A****************A******TTT*****A***GAAC**T*A**T*T**************A** << 17869807
17858021 >> TCGGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCA >> 17858095
17869806 << *A*T************C********************A**G****************T******CA********* << 17869732
17858096 >> CTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAA >> 17858145
17869731 << ****************C****C******G*G******************* << 17869682
Statistics
Matches: 241 (87.64%), Mismatches: 31 (11.27%), Indels: 3 (1.09%)
ATpairs: 46.47%, CGpairs: 53.53%, GTpairs: 0.00%
:i = 17869722
tupleindex: 3
intervalindex: 1
matches_in_interval: 304.0000
lowcenter: 35727803
highcenter: 35727851
testcenter: 35727827
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869726 center: 35736258 interval size: 300 g: 3
Alignment explanation
Indices: 17866294--17866572,17869686--17869956 Loop: 3113 Score: 245
Left Length: 279 Right Length: 271 Average length: 275.0
3 most common centers (desc): 35736252 35736256 35736257
17866284 >> (LF) CTCACGCCTG
17869966 << (RF) AAAATGTTTA
17866294 >> TAATCCCAGCACTTTGGGACGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAT >> 17866368
17869956 << *******************C**AC***AC**A*******--***********T**T******A****T*A****G << 17869884
17866369 >> GATGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAATTAGGCAGGCGTGGTGGTGCATGCCTGTAATCC >> 17866443
17869883 << *C********AC***************A*********-----****GAC***A****T***C*GT******C*** << 17869814
17866444 >> TAACTATCTGGGAGGCTGAATG-GGATGATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGC >> 17866517
17869813 << G*C***GA**T********CCGT***CT**C**C******G***A***C***G***********T*******A** << 17869739
17866518 >> CACTGCACACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAAAAAAAAAA >> 17866572
17869738 << ********--***********GT**C*T*G*********G*************** << 17869686
Statistics
Matches: 221 (78.93%), Mismatches: 49 (17.50%), Indels: 10 (3.57%)
ATpairs: 48.42%, CGpairs: 51.58%, GTpairs: 0.00%
:i = 17869726
tupleindex: 3
intervalindex: 1
matches_in_interval: 169.0000
lowcenter: 35736234
highcenter: 35736282
testcenter: 35736258
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17869734 center: 35737793 interval size: 300 g: 3
Alignment explanation
Indices: 17867841--17868105,17869685--17869956 Loop: 1579 Score: 257
Left Length: 265 Right Length: 272 Average length: 268.5
3 most common centers (desc): 35737793 35737799 35737797
17867831 >> (LF) CTCACACCTG
17869966 << (RF) AAAATGTTTA
17867841 >> TAATCTCTGCACTTTGGGAGGCCGAGGCAAGTGGATCACTTGAGGCCAGCAGTTCGAGACCAGCCTGACCAATGT >> 17867915
17869956 << *****G*T**************A****ACC*********--****A***C**T**T******A******A**GTG << 17869884
17867916 >> GGTGAAACCCCATCTCTACTAAAAATACAAAAA----TTAGCTGGG-T-GGT-G-GCACATGCCTGTAATCCCAG >> 17867982
17869883 << **********AC***************A*****TTTT*********G*A***T*A*C***--******C****** << 17869811
17867983 >> TTACTCGGGAGGCTGAGGCAAGAGAATTGCTTGAACCCAGGAGGCGGAGGCTGCAGTGAGCCGAGATTGTGCCTC >> 17868057
17869810 << G****A*T************C******C**C*******C**A*******GA**********T*****G*****T* << 17869736
17868058 >> TGCACTCCAGCCTGGGCAACAGAGC-AGACCCTG--TAAAAAAGAAAAAAA >> 17868105
17869735 << ********************C****C****A*G*GG*G*****T******* << 17869685
Statistics
Matches: 223 (80.80%), Mismatches: 38 (13.77%), Indels: 15 (5.43%)
ATpairs: 47.09%, CGpairs: 52.91%, GTpairs: 0.00%
:i = 17869734
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 35737769
highcenter: 35737817
testcenter: 35737793
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17870028 center: 35739664 interval size: 160 g: 2
Alignment explanation
Indices: 17869375--17869658,17870006--17870293 Loop: 347 Score: 236
Left Length: 284 Right Length: 288 Average length: 286.0
3 most common centers (desc): 35739668 35739665 35739667
17869365 >> (LF) TTTTGTTTGG
17870303 << (RF) GGAATTTTTG
17869375 >> TTTTGTTTGGTTTTGTTGAGACAGGGTCTTGCTCTATTGCCCAGGTCGGAGTGCAGTGGTGCGATTATAGCTCAC >> 17869449
17870293 << ****A***AA****A******AC*T****G*****C*GT******GA************G*A***GAGC****** << 17870219
17869450 >> TGCAGCCTCGATCTTCTTTGCTCA-GCAATACTCCTGCCTCAGCCTCTCAAGTAGCTGGGATAACAGGCGCAC-C >> 17869522
17870218 << ****T****ACG**G*GTC*A***T*AC**A****************G*************GA***TT*T*G*T* << 17870144
17869523 >> CAC-ATGCCTGGCTAATTTTTTTGATTTTTGGTAGAGAGAGGTCTTG-CTGTGTTGCCCAGGCTGGTTTGGAACT >> 17869595
17870143 << ***G*****************C*-******T*******G***CA**GT*GT*****CA****A****G*A***** << 17870070
17869596 >> CCTGAACTCAAGTGATACCCCTGCCACGGCCTCCTAA-GTCCTGGGATTACAGGTGTGAGCCAC >> 17869658
17870069 << *****G****C*****G*T**T***A********G**T**C*************G********* << 17870006
Statistics
Matches: 223 (77.16%), Mismatches: 60 (20.76%), Indels: 6 (2.08%)
ATpairs: 47.53%, CGpairs: 52.47%, GTpairs: 0.00%
:i = 17870028
tupleindex: 2
intervalindex: 2
matches_in_interval: 182.0000
lowcenter: 35739646
highcenter: 35739682
testcenter: 35739664
im3: 27.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17870039 center: 35739976 interval size: 40 g: 1
Alignment explanation
Indices: 17869682--17869956,17870020--17870292 Loop: 63 Score: 347
Left Length: 275 Right Length: 273 Average length: 274.0
3 most common centers (desc): 35739974 35739978 35739976
17869672 >> (LF) AATTGTAAAA
17870302 << (RF) GAATTTTTGA
17869682 >> TTTTTTTTTTTTTTTTGAGGCGGAGTCTCGCTCCGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCTGCTCACT >> 17869756
17870292 << *******************TA************A**GT*********************CA******C******* << 17870218
17869757 >> GCAAGCTCCGCCACCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGACTACAGGTGTCCACT >> 17869831
17870217 << ****G***A***A***T******T*AC*******************G******************TTGTG****G << 17870143
17869832 >> ACCAAGCCCAGCTAATTTTTTTTTATATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGTCAGGATGGTCTTGAT >> 17869906
17870142 << ****A***AC**********C*--**-****-********************T****C******A*********T << 17870072
17869907 >> CTCCTGACCTC-G-TGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA >> 17869956
17870071 << ***********T*C*********TC****C********************** << 17870020
Statistics
Matches: 238 (85.92%), Mismatches: 33 (11.91%), Indels: 6 (2.17%)
ATpairs: 47.90%, CGpairs: 52.10%, GTpairs: 0.00%
:i = 17870039
tupleindex: 1
intervalindex: 2
matches_in_interval: 20.0000
lowcenter: 35739968
highcenter: 35739984
testcenter: 35739976
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 17870182 center: 35729218 interval size: 300 g: 3
Alignment explanation
Indices: 17858888--17859207,17870011--17870327 Loop: 10803 Score: 355
Left Length: 320 Right Length: 317 Average length: 318.5
3 most common centers (desc): 35729218 35729213 35729215
17858878 >> (LF) AAAAGAATTT
17870337 << (RF) CAACCCGTAC
17858888 >> TTTCTTTT-CCTT-TTTTAAAAAATTTTAAAATTTATTATTTATTTCTCTTTTTTTGAGACAGAGTCTCACTCTG >> 17858960
17870327 << ********A***GG****G***CGGG******TG*-**-***-***-*-***********AC*******C***** << 17870258
17858961 >> GCGCCCAGGCTGGAGTGCTGTGGCGCAATCTTGGCTCACTGCAACTTTGGCCTCCTGGGTTCAAGCGATTCTCCT >> 17859035
17870257 << A*T***************T******AC****G*************G*GA******GT********A********* << 17870183
17859036 >> GCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCAAGCCCGGCTAATTTTTGTATTTTTAGTAGAG >> 17859110
17870182 << *************T***********G****TT****GT******A***A************************** << 17870108
17859111 >> ATGGGGTTTTGCCATATTGGCCAGGCTAGTCTTGAACTCCTGATCTCAAGTGATCTGCCCACCTCAGCTTCCCAA >> 17859185
17870107 << *GT******GT****C****A****A*C***************G****C******GT**TC****C**G****** << 17870033
17859186 >> AGTGCTGGGATTACAGGTGTGA >> 17859207
17870032 << *****************G**** << 17870011
Statistics
Matches: 267 (82.92%), Mismatches: 48 (14.91%), Indels: 7 (2.17%)
ATpairs: 52.06%, CGpairs: 47.94%, GTpairs: 0.00%
:i = 17870182
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35729194
highcenter: 35729242
testcenter: 35729218
im3: 89.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17870194 center: 35739800 interval size: 80 g: 2
Alignment explanation
Indices: 17869603--17869686,17870115--17870197 Loop: 428 Score: 49
Left Length: 84 Right Length: 83 Average length: 83.5
3 most common centers (desc): 35739800 35739799 35739801
17869593 >> (LF) ACTCCTGAAC
17870207 << (RF) GGAGGGTCCA
17869603 >> TCAAGTGATACCCCTGCCACGGCCTCCTAAGTC-CTGGGATTACAGGTGTGAGCCACCATGCCTGTCCTCAATTG >> 17869676
17870197 << *********A*A******A*T******G****TC******G****TTGTGGGT************C*-*-****A << 17870125
17869677 >> TAAAATTTTT >> 17869686
17870124 << *ACA****** << 17870115
Statistics
Matches: 62 (72.94%), Mismatches: 20 (23.53%), Indels: 3 (3.53%)
ATpairs: 51.61%, CGpairs: 48.39%, GTpairs: 0.00%
:i = 17870194
tupleindex: 2
intervalindex: 1
matches_in_interval: 125.0000
lowcenter: 35739788
highcenter: 35739812
testcenter: 35739800
im3: 18.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17870195 center: 35726805 interval size: 300 g: 3
Alignment explanation
Indices: 17856510--17856739,17870066--17870293 Loop: 13326 Score: 206
Left Length: 230 Right Length: 228 Average length: 229.0
3 most common centers (desc): 35726805 35726803 0
17856500 >> (LF) TGTTGGGTTT
17870303 << (RF) GGAATTTTTG
17856510 >> TTTGTTGTTTGTTTTCTGAGACAAGGTCTCGCTCTCTGTTGCCCAGGCTGGAGTGGAGTGATACAATTATGGCCC >> 17856584
17870293 << ***A**A***A****A*****ACCT**********--**GT**************G****CGCAC**GAG***A* << 17870221
17856585 >> ACTGCAACCTCTGCCCCCTGGGTTCAAGTGATCCTCCCACCTCAGCTTTCCGAGTATCTGGGACTACAGGCATAA >> 17856659
17870220 << ***************A**GT************A****AC*******G*G**T****C***********TT**GGG << 17870146
17856660 >> GCCACCACACCTGACTAATTCTTGTATTTTTTGTAGAGATGGGGTTTCACCATGTTGCCAAGGGTGGTCTCGAAC >> 17856734
17870145 << T******AC****C******A**********T*******GT****************CAG***A******A**** << 17870071
17856735 >> TCCTG >> 17856739
17870070 << ***** << 17870066
Statistics
Matches: 180 (78.26%), Mismatches: 48 (20.87%), Indels: 2 (0.87%)
ATpairs: 50.56%, CGpairs: 49.44%, GTpairs: 0.00%
:i = 17870195
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35726781
highcenter: 35726829
testcenter: 35726805
im3: 67.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17870204 center: 35732612 interval size: 300 g: 3
Alignment explanation
Indices: 17862319--17862616,17869995--17870293 Loop: 7378 Score: 424
Left Length: 298 Right Length: 299 Average length: 298.5
3 most common centers (desc): 35732612 35732613 35732611
17862309 >> (LF) TGCATCTTTT
17870303 << (RF) GGAATTTTTG
17862319 >> TTTTTTTTTTTTTTTTTAAGACGGAGTCTCGGTCTGTCACCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCAC >> 17862393
17870293 << *****************C***A*********G*****************************A************* << 17870219
17862394 >> TGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCTCCCAT >> 17862468
17870218 << *****G***A**************T*AC*********************T**A*************TT*T****G << 17870144
17862469 >> CACCACGCTCGGCTAAGTTTTTGTAATTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCT >> 17862543
17870143 << *****A**GA******-********A************************T****C*A****A******A**T** << 17870070
17862544 >> CCTGACCTC-G-TGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGCACCCGGCC >> 17862616
17870069 << *********T*C*****GT**T*************************************C*******C***T*** << 17869995
Statistics
Matches: 266 (88.67%), Mismatches: 31 (10.33%), Indels: 3 (1.00%)
ATpairs: 44.74%, CGpairs: 55.26%, GTpairs: 0.00%
:i = 17870204
tupleindex: 3
intervalindex: 1
matches_in_interval: 138.0000
lowcenter: 35732588
highcenter: 35732636
testcenter: 35732612
im3: 44.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17870294 center: 35733040 interval size: 300 g: 3
Alignment explanation
Indices: 17862745--17862795,17870245--17870295 Loop: 7449 Score: 43
Left Length: 51 Right Length: 51 Average length: 51.0
3 most common centers (desc): 35733040 35733042 35733041
17862735 >> (LF) ATAGTTCTGT
17870305 << (RF) CGGGAATTTT
17862745 >> ACTTTTTTTTTTTTTTTTTAAGAGATAGGGTTTCACTAT-TG-CTCAGGCTGG >> 17862795
17870295 << *******************--*****C*T**G**C**G*C*GT*G******** << 17870245
Statistics
Matches: 42 (79.25%), Mismatches: 7 (13.21%), Indels: 4 (7.55%)
ATpairs: 66.67%, CGpairs: 33.33%, GTpairs: 0.00%
:i = 17870294
tupleindex: 3
intervalindex: 1
matches_in_interval: 271.0000
lowcenter: 35733016
highcenter: 35733064
testcenter: 35733040
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17871829 center: 35729960 interval size: 300 g: 3
Alignment explanation
Indices: 17858131--17858150,17871810--17871829 Loop: 13659 Score: 40
Left Length: 20 Right Length: 20 Average length: 20.0
3 most common centers (desc): 35729960 0 0
17858121 >> (LF) CTCTGTCTCA
17871839 << (RF) ACGTAGTCAA
17858131 >> AAAAAAAAAAAAAAAAAAAA >> 17858150
17871829 << ******************** << 17871810
Statistics
Matches: 20 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 100.00%, CGpairs: 0.00%, GTpairs: 0.00%
:i = 17871829
tupleindex: 3
intervalindex: 1
matches_in_interval: 568.0000
lowcenter: 35729936
highcenter: 35729984
testcenter: 35729960
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17872871 center: 35731959 interval size: 300 g: 3
Alignment explanation
Indices: 17858935--17859207,17872760--17873020 Loop: 13552 Score: 246
Left Length: 273 Right Length: 261 Average length: 267.0
3 most common centers (desc): 35731959 35731952 35731967
17858925 >> (LF) TTTATTTCTC
17873030 << (RF) CTAAAGAATT
17858935 >> TTTTTTTGA-GACAGAGTCTCA--CTCTGGCGCCCAGGCTGGAGTGCTGTGGCGCAATCTTGGCTCACTGCAACT >> 17859006
17873020 << *********T****TC****AAAC*****A*T***************T*******A***T************G*G << 17872946
17859007 >> TTGGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCAAG >> 17859081
17872945 << ****------**G*-*****T**G****GT***********A************GT********C********A* << 17872878
17859082 >> CCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATATTGGCCAGGCTAGTCTTGAACTCCTGATCT >> 17859156
17872877 << **************T*******A************G********C********T**C****G*********CC** << 17872803
17859157 >> CAAGTGATCTGCCCACCTCAGCTTCCCAAAGTGCTGGGATTACAGGTGTGA >> 17859207
17872802 << *---**G-*****A---*C-**G************T**********G**** << 17872760
Statistics
Matches: 222 (80.43%), Mismatches: 36 (13.04%), Indels: 18 (6.52%)
ATpairs: 45.05%, CGpairs: 54.95%, GTpairs: 0.00%
:i = 17872871
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35731935
highcenter: 35731983
testcenter: 35731959
im3: 52.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17872999 center: 35742402 interval size: 300 g: 3
Alignment explanation
Indices: 17869385--17869657,17872756--17873020 Loop: 3098 Score: 174
Left Length: 273 Right Length: 265 Average length: 269.0
3 most common centers (desc): 35742406 35742402 35742408
17869375 >> (LF) TTTTGTTTGG
17873030 << (RF) CTAAAGAATT
17869385 >> TTTTGTTGA-GACAGGGTCTT--GCTCTATTGCCCAGGTCGGAGTGCAGTGGTGCGATTATAGCTCACTGCAGCC >> 17869456
17873020 << ****A****T****T******AA*****C*GT******GA************G**A**G**C**********-** << 17872947
17869457 >> TCGATCTTCTTTGCTCA-GCAATACTCCTGCCTCAGCCTCTCAAGTAGCTGGGATAACAGGCGCAC-CCAC-ATG >> 17869528
17872947 << -*--*-*CCC--*****T*****G****GT**********GAC***********G*******T*CAC****G*** << 17872878
17869529 >> CCTGGCTAATTTTTTTGATTTTTGGTAGAGAGAGGTCTT-GCTGTGTTGCCCAGGCTGGTTTGGAACTCCTGAAC >> 17869602
17872877 << **G***********T*-******A*******AC**C***A**GT*****C****T*****G*G*********CC* << 17872804
17869603 >> TCAAGTGATACCCCTGCCACGGCCTCCTAA-GTCCTGGGATTACAGGTGTGAGCCA >> 17869657
17872803 << **---**---**--****AA*******G**T**C**T**********G******** << 17872756
Statistics
Matches: 213 (75.80%), Mismatches: 44 (15.66%), Indels: 24 (8.54%)
ATpairs: 46.01%, CGpairs: 53.99%, GTpairs: 0.00%
:i = 17872999
tupleindex: 3
intervalindex: 1
matches_in_interval: 123.0000
lowcenter: 35742378
highcenter: 35742426
testcenter: 35742402
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17873503 center: 35740052 interval size: 300 g: 3
Alignment explanation
Indices: 17866280--17866573,17873479--17873761 Loop: 6905 Score: 314
Left Length: 294 Right Length: 283 Average length: 288.5
3 most common centers (desc): 35740043 35740050 35740041
17866270 >> (LF) GCCAGGTTGG
17873771 << (RF) CGCCCCGCGT
17866280 >> GTGGCTCACGCCTGTAATCCCAGCACTTTGGGACGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGACC >> 17866354
17873761 << **********************T**********C************T******--***********T******** << 17873689
17866355 >> AGCCTGGCCAACA-TGATGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAATTAGGCAGGCGTGGTGGT >> 17866428
17873688 << *A******A***CG**-*********C**********************--------****-*A**-***-**** << 17873626
17866429 >> G-CATGC-C-TGTAATCCTAACTATCT-GGGAGGCTGAATG-GGATGATTGCTTGAACCTGGGAGGCAGAGGTTG >> 17866498
17873625 << *C*****T*G****C***G*C***-**G**********CCGT***CT**G***************T*C******* << 17873552
17866499 >> CAGTGAGCCGAGATCGCGCCACTGCACACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAAAAAAAAAAG >> 17866573
17873551 << *********T***GA**T*********--****************************T***************** << 17873479
Statistics
Matches: 252 (84.00%), Mismatches: 25 (8.33%), Indels: 23 (7.67%)
ATpairs: 46.43%, CGpairs: 53.57%, GTpairs: 0.00%
:i = 17873503
tupleindex: 3
intervalindex: 1
matches_in_interval: 121.0000
lowcenter: 35740028
highcenter: 35740076
testcenter: 35740052
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17873514 center: 35743768 interval size: 300 g: 3
Alignment explanation
Indices: 17869995--17870294,17873474--17873772 Loop: 3179 Score: 391
Left Length: 300 Right Length: 299 Average length: 299.5
3 most common centers (desc): 35743768 35743767 0
17869985 >> (LF) AATGATTTTA
17873782 << (RF) TTCACTCTGG
17869995 >> GGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACCTGAGGTCAGG >> 17870069
17873772 << ***C*****************************T**************T****T**GT******--********* << 17873700
17870070 >> AGTTCAAGACCAACCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAA-TTAGCCAGGCATGGTG >> 17870143
17873699 << **T**C******A****C*A***CGA*********G**********************T*****AC**AC***** << 17873625
17870144 >> GTGGGTGTTTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCA >> 17870218
17873624 << *GTA*GTGG****************G**********************C**************T*C********* << 17873550
17870219 >> GTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAA >> 17870293
17873549 << *******T***GAC*T**************************C*A*************************C**** << 17873475
17870294 >> G >> 17870294
17873474 << * << 17873474
Statistics
Matches: 260 (86.38%), Mismatches: 38 (12.62%), Indels: 3 (1.00%)
ATpairs: 45.00%, CGpairs: 55.00%, GTpairs: 0.00%
:i = 17873514
tupleindex: 3
intervalindex: 1
matches_in_interval: 195.0000
lowcenter: 35743744
highcenter: 35743792
testcenter: 35743768
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17873527 center: 35746502 interval size: 160 g: 2
Alignment explanation
Indices: 17872744--17872994,17873508--17873772 Loop: 513 Score: 245
Left Length: 251 Right Length: 265 Average length: 258.0
3 most common centers (desc): 35746509 35746516 35746510
17872734 >> (LF) AAGGAAGCAG
17873782 << (RF) TTCACTCTGG
17872744 >> GGCTGGGCTCAATGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGAGC-C-----CAGGAG >> 17872812
17873772 << ***C****C**C*******************G*T**************************A*T*CTCCA****** << 17873698
17872813 >> TTCGAGACCAGTCTGGCCAACA-TGGCAAAGCCCCATCTCTACAAAAAATATAAAAA-TTAGCCGGGCATGGTGG >> 17872885
17873697 << T*********AG*****A***CG**AC***-****C*******A*******G*****T*****A***AC****** << 17873624
17872886 >> CACGTGCCTGTTGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCC--A-A-GG-G-T-GCAG >> 17872953
17873623 << **A*GT*****T*************C***********GT****T**G******T**ACCC*C*G**T*C*A**** << 17873549
17872954 >> TGAGCCATGATAGCGCCACTGCACTCCAGCCTGGGTGACAG >> 17872994
17873548 << *******T**GA**T************************** << 17873508
Statistics
Matches: 215 (80.83%), Mismatches: 35 (13.16%), Indels: 16 (6.02%)
ATpairs: 40.93%, CGpairs: 59.07%, GTpairs: 0.00%
:i = 17873527
tupleindex: 2
intervalindex: 2
matches_in_interval: 162.0000
lowcenter: 35746484
highcenter: 35746520
testcenter: 35746502
im3: 27.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17873530 center: 35744832 interval size: 300 g: 3
Alignment explanation
Indices: 17871299--17871352,17873480--17873533 Loop: 2127 Score: 63
Left Length: 54 Right Length: 54 Average length: 54.0
3 most common centers (desc): 35744832 0 0
17871289 >> (LF) AACGAGAGTG
17873543 << (RF) GTTCTGACGT
17871299 >> CCTCTGCACTTCAGTCTGGGCTACAGAGTGAGACCCTGTCTCAAAAAAAAAAAA >> 17871352
17873533 << **T*******G***G*****AC****C*******A*GT**************** << 17873480
Statistics
Matches: 45 (83.33%), Mismatches: 9 (16.67%), Indels: 0 (0.00%)
ATpairs: 53.33%, CGpairs: 46.67%, GTpairs: 0.00%
:i = 17873530
tupleindex: 3
intervalindex: 1
matches_in_interval: 132.0000
lowcenter: 35744808
highcenter: 35744856
testcenter: 35744832
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17873575 center: 35741587 interval size: 300 g: 3
Alignment explanation
Indices: 17867816--17868104,17873480--17873772 Loop: 5375 Score: 309
Left Length: 289 Right Length: 293 Average length: 291.0
3 most common centers (desc): 35741587 35741590 35741588
17867806 >> (LF) ACGGTTATGA
17873782 << (RF) TTCACTCTGG
17867816 >> GGCTGGGCACGGTGGCTCACACCTGTAATCTCTGCACTTTGGGAGGCCGAGGCAAGTGGATCACTTGAGGCCAGC >> 17867890
17873772 << ***C****C*T*********C*********G*TT**************T*****C*GT******--****A***C << 17873700
17867891 >> AGTTCGAGACCAGCCTGACCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAA-TTAGCTGGGTG-G-TG >> 17867962
17873699 << **T*********A****C*A**G*GA**********C*********************T***********A*C** << 17873625
17867963 >> GCACATGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAAGAGAATTGCTTGAACCCAGGAGGCGGAGGCTGCA >> 17868037
17873624 << ***ACGT******C******G*******************C******G*********AC****T******A**** << 17873550
17868038 >> GTGAGCCGAGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGC-AGAC-CC-TGTAAAAAAGAAAAAA >> 17868104
17873549 << *******T***G**GT**T*****************AC****C*AC****A**T*G*G*****T****** << 17873480
Statistics
Matches: 242 (82.03%), Mismatches: 45 (15.25%), Indels: 8 (2.71%)
ATpairs: 44.21%, CGpairs: 55.79%, GTpairs: 0.00%
:i = 17873575
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35741563
highcenter: 35741611
testcenter: 35741587
im3: 43.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17874563 center: 35748836 interval size: 80 g: 2
Alignment explanation
Indices: 17874182--17874315,17874522--17874654 Loop: 206 Score: 92
Left Length: 134 Right Length: 133 Average length: 133.5
3 most common centers (desc): 35748836 35748837 0
17874172 >> (LF) ATTTATTTAC
17874664 << (RF) GTCGATTGAA
17874182 >> TTATATTTTTTATAGAGATGGGATCTTGCTATGTTATCTAAGCTGGTCTCAAACTCCTGGCCTC-AGGCAGTCTT >> 17874255
17874654 << **C*******TGG*****GT**A*-*G**G*****CC*G*C*********G*********C***C**TA*-***C << 17874582
17874256 >> TA-GCCTTTGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATACCTGGCCCTGGA >> 17874315
17874581 << GGA****GC**************G***********AC*A*****T**GC*******-**** << 17874522
Statistics
Matches: 102 (75.00%), Mismatches: 29 (21.32%), Indels: 5 (3.68%)
ATpairs: 49.02%, CGpairs: 50.98%, GTpairs: 0.00%
:i = 17874563
tupleindex: 2
intervalindex: 1
matches_in_interval: 55.0000
lowcenter: 35748824
highcenter: 35748848
testcenter: 35748836
im3: 28.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17874986 center: 35749756 interval size: 80 g: 2
Alignment explanation
Indices: 17874547--17874802,17874954--17875218 Loop: 151 Score: 158
Left Length: 256 Right Length: 265 Average length: 260.5
3 most common centers (desc): 35749765 35749756 35749755
17874537 >> (LF) TTGGCTAACA
17875228 << (RF) TACCAAGTAC
17874547 >> CCTATAATCCCGGCACTTTGGGAGGCCGAGGCAGGCAGATATCTCGAGCCCAGGAGTTGGAGACCAGCCTGGCCA >> 17874621
17875218 << ***********T**A***********AT*******TC***GT**A*******T*****A*************T** << 17875144
17874622 >> ACATGGCGAAACCTG-TCTCTGGTAAAAATACAAAAG-TTAGCT-GG-GCA-TGGTG-G--C--AG-GCGCCAGA >> 17874685
17875143 << ****T*A**C****GG**G**TGT***C*-*AA****T**C**GT**A*A*G*****G*AC*GG*AT*AAT***A << 17875070
17874686 >> TACTTGGGAGGCTGAAGTAGGAGGATCACCTGAGCCTGAGGAGGTCAAGGCTGCAGTGAGTTGTGATCGCACTAC >> 17874760
17875069 << G**********T***C**C******GAC*A******GA-******AC*************GGT*****T*G*GA* << 17874996
17874761 >> TGAACTCCGGCCTGGGTGACAGAGTGAGGCCTTGTCTCAAAA >> 17874802
17874995 << **G*****T***************GT**T*AG********** << 17874954
Statistics
Matches: 197 (73.78%), Mismatches: 57 (21.35%), Indels: 13 (4.87%)
ATpairs: 43.15%, CGpairs: 56.85%, GTpairs: 0.00%
:i = 17874986
tupleindex: 2
intervalindex: 1
matches_in_interval: 46.0000
lowcenter: 35749744
highcenter: 35749768
testcenter: 35749756
im3: 25.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17875173 center: 35747975 interval size: 300 g: 3
Alignment explanation
Indices: 17872755--17873019,17874952--17875228 Loop: 1932 Score: 192
Left Length: 265 Right Length: 277 Average length: 271.0
3 most common centers (desc): 35747975 35747968 35747983
17872745 >> (LF) GCTGGGCTCA
17875238 << (RF) TGGATCGTTC
17872755 >> ATGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGG-----CA---GAGCCCAGGAGTTCGAGACC >> 17872821
17875228 << ****A***A****T******G***A***********A********TCCTA**GAA*******T*****A****** << 17875154
17872822 >> AGTCTGGCCAACATGGCAAAGCCCCATCTCTACAAAA-AATATAAAAATTAGCCGGGCATGGTGGCACGTGCCTG >> 17872895
17875153 << **G****T******T*AC*CT**A*G**G********C***-****C***C***T**AC*TG***AC******GT << 17875080
17872896 >> TTGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCCA-AGG--G----TGCAGTGAGCCATGA >> 17872963
17875079 << *T**AT***AG***AC*****T*************G***********ACC***AA*TCCG*************** << 17875005
17872964 >> TAGCGCCACTGCACTCCAGCCTGGGTGACAGAGCAAAAGACCTTGTCTTCAAAAAA >> 17873019
17875004 << *GT*G**A****************************--***AG*****-******* << 17874952
Statistics
Matches: 215 (76.51%), Mismatches: 46 (16.37%), Indels: 20 (7.12%)
ATpairs: 45.12%, CGpairs: 54.88%, GTpairs: 0.00%
:i = 17875173
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 35747951
highcenter: 35747999
testcenter: 35747975
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17875182 center: 35745234 interval size: 300 g: 3
Alignment explanation
Indices: 17870007--17870286,17874948--17875227 Loop: 4661 Score: 243
Left Length: 280 Right Length: 280 Average length: 280.0
3 most common centers (desc): 35745234 35745233 0
17869997 >> (LF) CTGGGCGCAG
17875237 << (RF) GGATCGTTCT
17870007 >> TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACCTGAGGTCAGGAGTTCAAGACCA >> 17870081
17875227 << ***A***A****T**********A***********AT****T**T*******A****GG**T*****AC****** << 17875153
17870082 >> ACCTGACCAACATGGTGAAACCCTGTCTCTACTAAA-AATACAAAAATTAGCCAGGCATGGTGGTGGGTGTTTGT >> 17870155
17875152 << C****CT******T****C***AGG**G****T***C***A-***C***C******AC*TG*****G***GGGT* << 17875079
17870156 >> AGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGAT >> 17870230
17875078 << ***AT***AG**********T*****AC****C*GAC*****C**GA*****AA****G***********TA*** << 17875004
17870231 >> CACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAAAA >> 17870286
17875003 << ***G**A**************************T******AC**********C*** << 17874948
Statistics
Matches: 218 (77.58%), Mismatches: 61 (21.71%), Indels: 2 (0.71%)
ATpairs: 46.33%, CGpairs: 53.67%, GTpairs: 0.00%
:i = 17875182
tupleindex: 3
intervalindex: 1
matches_in_interval: 106.0000
lowcenter: 35745210
highcenter: 35745258
testcenter: 35745234
im3: 64.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17875190 center: 35741508 interval size: 300 g: 3
Alignment explanation
Indices: 17866281--17866570,17874948--17875227 Loop: 8377 Score: 209
Left Length: 290 Right Length: 280 Average length: 285.0
3 most common centers (desc): 35741508 35741516 35741517
17866271 >> (LF) CCAGGTTGGG
17875237 << (RF) GGATCGTTCT
17866281 >> TGGCTCACGCCTGTAATCCCAGCACTTTGGGACGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGACCA >> 17866355
17875227 << ***A***A****T**********A********C**A********T************GG**T*****A******* << 17875153
17866356 >> GCCTGGCCAACATGATGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAATTAGGCAGGCGTGGTGGTGC >> 17866430
17875152 << ******T******TC***C***A*G**-*--***------*****C**AA***C***C*G****A**TG****** << 17875087
17866431 >> ATGCCTGTAATCCTA-ACTATCT-GGGAGGCTGAA-TGGGATGATTGCTTGAACCTGGGAGGCAGAGGTTGCAGT >> 17866502
17875086 << C****GT**C*--**G*C*GT**A******T***CC*****C**G*******C**GA*****AA****G****** << 17875014
17866503 >> GAGCCGAGATCGCGCCACTGCACACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAAAAAAAA >> 17866570
17875013 << *****TA****T*G**A******--*****************T*GT******A***********C*** << 17874948
Statistics
Matches: 224 (76.45%), Mismatches: 53 (18.09%), Indels: 16 (5.46%)
ATpairs: 46.88%, CGpairs: 53.13%, GTpairs: 0.00%
:i = 17875190
tupleindex: 3
intervalindex: 1
matches_in_interval: 116.0000
lowcenter: 35741484
highcenter: 35741532
testcenter: 35741508
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17875795 center: 35750990 interval size: 80 g: 2
Alignment explanation
Indices: 17874948--17875255,17875735--17876046 Loop: 479 Score: 242
Left Length: 308 Right Length: 312 Average length: 310.0
3 most common centers (desc): 35750990 35750991 35750992
17874938 >> (LF) TAATACAATG
17876056 << (RF) TATATTAAAA
17874948 >> TTTCTTTTTTGAGACAGAGTCTT-GC-TCTGTCACCC-AGGCTGGAGT-GCAGAGGGGTGATCATGGCTCACTGC >> 17875018
17876046 << ***A*******************T**G*A********G**********A****A*A--**-***CT********* << 17875975
17875019 >> A-GCCTCAACCTCCA-GGGCTCAAGCAGTCCTCCCACCTCATCCTCCCAAGTGACTGTAACTATGGGCACGCACC >> 17875091
17875974 << *T*******A**A*AA*********ACT*************C*****AC***TC***CC****GT*****TAC** << 17875900
17875092 >> AGTACACCTGGCCAATCTTTAATTCTTTTGTAGGGAGGAGGTCTCA-CTATGTTGTCCA-GGCTGGTCTCAAACT >> 17875164
17875899 << *GG***A*GT**A***A***A***-******C*T**ATC*******T********C**GA*********AC**** << 17875826
17875165 >> CTTGGGCTCAAGTGATCCTCCTGCCTTAGCCTCCCAAAGAGCTGGGATTATAGGCATGAACCATCTTG-CTAGGT >> 17875238
17875825 << *G***G****************T***G************A****T*****GG**AC***C***G*C**A**-*** << 17875752
17875239 >> C--ACAAACTTGTTTTTAA >> 17875255
17875751 << *GA*****-*-******** << 17875735
Statistics
Matches: 247 (77.43%), Mismatches: 54 (16.93%), Indels: 18 (5.64%)
ATpairs: 49.39%, CGpairs: 50.61%, GTpairs: 0.00%
:i = 17875795
tupleindex: 2
intervalindex: 1
matches_in_interval: 43.0000
lowcenter: 35750978
highcenter: 35751002
testcenter: 35750990
im3: 23.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17875922 center: 35745731 interval size: 300 g: 3
Alignment explanation
Indices: 17869684--17869956,17875776--17876050 Loop: 5819 Score: 180
Left Length: 273 Right Length: 275 Average length: 274.0
3 most common centers (desc): 35745731 35745734 35745732
17869674 >> (LF) TTGTAAAATT
17876060 << (RF) TTTTTATATT
17869684 >> TTTTTTTTTTTTTTGAGGCGGAGTCTC-GC-TCCGTTGCCC-AGGCTGGAGT-GCAGTGGCACGATCTCTGCTCA >> 17869754
17876050 << *****************T*T******AT**G*AA**GT***G**********A******AA--*-**TCT***** << 17875979
17869755 >> CTGCAAGC-TCCGCCACCC-GGGTTCACGCCATTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGACTACAGGTGTC >> 17869827
17875978 << ********G**TTA*AA*AA***G***T*AC**G****GT**********GAC******************GTGT << 17875904
17869828 >> CACTACCAAGCCCAGCTAATTTTTTTTTATATTTTTAGTAGAGACAGGGTTTCACCG-TGTTAGTCA-GGATGGT >> 17869900
17875903 << AC*G****GTA**************---**-*****-**C****A*****G***T*AT****C*G*GA**G**** << 17875834
17869901 >> CTTGATCTCCTGACCTC--GTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA >> 17869956
17875833 << *****T******C****TT*******A**A**********************T***** << 17875776
Statistics
Matches: 213 (75.27%), Mismatches: 52 (18.37%), Indels: 18 (6.36%)
ATpairs: 47.89%, CGpairs: 52.11%, GTpairs: 0.00%
:i = 17875922
tupleindex: 3
intervalindex: 1
matches_in_interval: 115.0000
lowcenter: 35745707
highcenter: 35745755
testcenter: 35745731
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17875934 center: 35749525 interval size: 300 g: 3
Alignment explanation
Indices: 17873480--17873761,17875762--17876048 Loop: 2000 Score: 254
Left Length: 282 Right Length: 287 Average length: 284.5
3 most common centers (desc): 35749525 35749523 35749526
17873470 >> (LF) TTCTCTTTTC
17876058 << (RF) TTTATATTAA
17873480 >> TTTTTTTTTTTTGAGATGGAGTCTCACCCT--GTCACCC-AGGCTGGAGT-GCAGTGGTGCAGTCTTGGCTCACT >> 17873550
17876048 << ****************GT******A*C***AA*******G**********A******A**---**TCT******* << 17875977
17873551 >> GCAA-CCTCCGTCTCCCAGGT-TCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCATG >> 17873623
17875976 << ****C****TT***A*AA**CG*****A***G****GT***********A*******************GT**** << 17875902
17873624 >> CCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCA-CAGCGTTAGCCA-GGATGGTCTCGA >> 17873696
17875901 << ********A**************T*-*****-**C****AT****G***T*ATA***C***GA**G******A** << 17875829
17873697 >> TCTCCTGACCTC--GTGATCTGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCAC >> 17873761
17875828 << T******C****TT******GA***T***GT*************G**T******G**A********* << 17875762
Statistics
Matches: 232 (79.45%), Mismatches: 45 (15.41%), Indels: 15 (5.14%)
ATpairs: 46.55%, CGpairs: 53.45%, GTpairs: 0.00%
:i = 17875934
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 35749501
highcenter: 35749549
testcenter: 35749525
im3: 52.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17875998 center: 35745424 interval size: 300 g: 3
Alignment explanation
Indices: 17869385--17869677,17875741--17876043 Loop: 6063 Score: 212
Left Length: 293 Right Length: 303 Average length: 298.0
3 most common centers (desc): 35745424 35745421 35745420
17869375 >> (LF) TTTTGTTTGG
17876053 << (RF) ATTAAAAAAA
17869385 >> TTTTGTTGAGACAGGGTCTT-GC-TCTATTGCCC-AGGTCGGAGT-GCAGTGGTGCGATTATAGCTCACTGCA-G >> 17869454
17876043 << ****A*********T*****T**G*A*C*GT***G***GA*****A******A**---*G*C***********T* << 17875972
17869455 >> CCTCGATCTTCTTTG-CTCA-GCAATACTCCTGCCTCAGCCTCTCAAGTAGCTGGGATAACAGGCGCA--CC-C- >> 17869525
17875971 << ****T********C*C****T*AC**G****GT**********GAC***********GA******T**AC**T*G << 17875897
17869524 >> ACATGCCTGGCTAATTTTTTTGATTTTTGGTAGAGAGAGG-TCTTG-CTGTGTTG-CCCAGGCTGGTTTGGAACT >> 17869595
17875896 << ****-**T*-**********--******A**C****A***C***GTT**T*****C***A*******G*A***** << 17875826
17869596 >> CCTGAACTCAAGTGATACCCCTGCCACGGCCTCCTAA-GTCCTGGGATTACAGGTGTGAGCCACCATGCCTG-TC >> 17869668
17875825 << ****CG**********G*A***T**A*T******G**T**C***T******G*************C**A***C** << 17875751
17869669 >> CT-CAATTGT >> 17869677
17875750 << **T***T*** << 17875741
Statistics
Matches: 238 (76.77%), Mismatches: 48 (15.48%), Indels: 24 (7.74%)
ATpairs: 47.90%, CGpairs: 52.10%, GTpairs: 0.00%
:i = 17875998
tupleindex: 3
intervalindex: 1
matches_in_interval: 133.0000
lowcenter: 35745400
highcenter: 35745448
testcenter: 35745424
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17876005 center: 35738369 interval size: 300 g: 3
Alignment explanation
Indices: 17862322--17862605,17875762--17876050 Loop: 13156 Score: 208
Left Length: 284 Right Length: 289 Average length: 286.5
3 most common centers (desc): 35738369 35738367 35738371
17862312 >> (LF) ATCTTTTTTT
17876060 << (RF) TTTTTATATT
17862322 >> TTTTTTTTTTTTTTAAGACGGAGTCTCGGTCT--GTCACCC-AGGCTGGAGT-GCAGTGGCGGGATCTCGGCTCA >> 17862392
17876050 << **************C****T******AT*G**AA*******G**********A******AA*---**TCT***** << 17875979
17862393 >> CTGCAAGC-TCCGCCTCCCAGGT-TCACGCCATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCTCC >> 17862465
17875978 << ********G**TTA**A*AA**CG***T*AC**G****GT***********A***A****************T*T << 17875904
17862466 >> CATCACCACGCTCGGCTAAGTTTTTGTAATTTTAGTAGAGACAGGGTTTCACCG-TGTTAGCCA-GGATGGTCTC >> 17862538
17875903 << ACG******TAG*T*****-*****-**A****A**C****A*****G***T*AT****C***GA**G******A << 17875831
17862539 >> GATCTCCTGACCTC--GTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCAC >> 17862605
17875830 << **T******C****TT******GA***T****T****************T******G**A****C**** << 17875762
Statistics
Matches: 224 (76.19%), Mismatches: 55 (18.71%), Indels: 15 (5.10%)
ATpairs: 45.54%, CGpairs: 54.46%, GTpairs: 0.00%
:i = 17876005
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 35738345
highcenter: 35738393
testcenter: 35738369
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17876237 center: 35752183 interval size: 80 g: 2
Alignment explanation
Indices: 17875893--17876050,17876132--17876290 Loop: 81 Score: 100
Left Length: 158 Right Length: 159 Average length: 158.5
3 most common centers (desc): 35752183 35752184 35752182
17875883 >> (LF) AATTAGCTGG
17876300 << (RF) CGGAATCCTT
17875893 >> ATGTGGTGGCATGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTG-GGAGGATCACTTGAGCCCAAGAAGAT >> 17875966
17876290 << *****-*****C*********T*******G***************TGTT****T*********T***CC**C*CG << 17876217
17875967 >> TGAGGCTTGCAGTGAGCTCTGACAA--C-ACTGCAACTCCAGCCTGGGGTGACAAAGGCTAAGACTCTGTCTCAA >> 17876038
17876216 << T****A***********GCT**AACAC*G******-************GT-**C***TC*C*T**C*G***TT** << 17876144
17876039 >> AAAAAAAAAAAA >> 17876050
17876143 << G***G****G** << 17876132
Statistics
Matches: 120 (74.07%), Mismatches: 35 (21.60%), Indels: 7 (4.32%)
ATpairs: 46.67%, CGpairs: 53.33%, GTpairs: 0.00%
:i = 17876237
tupleindex: 2
intervalindex: 1
matches_in_interval: 40.0000
lowcenter: 35752171
highcenter: 35752195
testcenter: 35752183
im3: 20.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17876272 center: 35752048 interval size: 80 g: 2
Alignment explanation
Indices: 17875772--17875827,17876220--17876276 Loop: 392 Score: 45
Left Length: 56 Right Length: 57 Average length: 56.5
3 most common centers (desc): 35752047 35752048 0
17875762 >> (LF) GTGGCTCACA
17876286 << (RF) CACCGTCCAC
17875772 >> CCGGTAATCTCAGC-ACTTTGGGAGGCTGAGGTA-GGAGGATCACTTGAGGCCAGGAG >> 17875827
17876276 << **A******G****G***GT**-********TG*T****T*********TG**C**** << 17876220
Statistics
Matches: 45 (77.59%), Mismatches: 10 (17.24%), Indels: 3 (5.17%)
ATpairs: 42.22%, CGpairs: 57.78%, GTpairs: 0.00%
:i = 17876272
tupleindex: 2
intervalindex: 1
matches_in_interval: 34.0000
lowcenter: 35752036
highcenter: 35752060
testcenter: 35752048
im3: 15.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17876418 center: 35752251 interval size: 80 g: 2
Alignment explanation
Indices: 17875760--17875897,17876355--17876491 Loop: 457 Score: 117
Left Length: 138 Right Length: 137 Average length: 137.5
3 most common centers (desc): 35752251 35752252 35752253
17875750 >> (LF) GGACCAGACA
17876501 << (RF) GTCGCCCGAC
17875760 >> CGGTGGCTCACACCGGTAATCTCAGCACTTTGGGAGGCTGAGGTAGGAGGATCACTTGAGGCCAGGAGTTCAAGA >> 17875834
17876491 << **********AC**A******GA***************GT***GC**A*G*****G**G**AA**G*****C*** << 17876417
17875835 >> CCAGCCAGGGCCAACATAGTTGAGACCCTATCTCCACAAAAAATA-AAAAATTAGCTGGATGTG >> 17875897
17876416 << ******A**-**A****C**-**T***A*C****AC*A*******G********G****C**** << 17876355
Statistics
Matches: 108 (77.70%), Mismatches: 28 (20.14%), Indels: 3 (2.16%)
ATpairs: 48.15%, CGpairs: 51.85%, GTpairs: 0.00%
:i = 17876418
tupleindex: 2
intervalindex: 1
matches_in_interval: 63.0000
lowcenter: 35752239
highcenter: 35752263
testcenter: 35752251
im3: 13.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17878888 center: 35752511 interval size: 300 g: 3
Alignment explanation
Indices: 17873476--17873772,17878739--17879030 Loop: 4966 Score: 345
Left Length: 297 Right Length: 292 Average length: 294.5
3 most common centers (desc): 35752511 35752504 35752506
17873466 >> (LF) TTTCTTCTCT
17879040 << (RF) ACTCAAAAAC
17873476 >> TTTCTTT-TTT-TTTTTTGAGATGGAGTCTCACCCTGTCACCCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCA >> 17873548
17879030 << ***C***C***C**********G********A*A****------**-*****G***********T***G****** << 17878963
17873549 >> CTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCATG >> 17873623
17878962 << ************G****AC*********T********************T************A*********GG* << 17878888
17873624 >> CCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACAGCGTTAGCCAGGATGGTCTCGATC >> 17873698
17878887 << ******ACA********G**********************T*********ATA***C******G*******T*T* << 17878813
17873699 >> TCCTGACCTCGTGATCTGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCCCGCC >> 17873772
17878812 << ****************G***GA***G**************G*****G*****T*********AGT*****C*** << 17878739
Statistics
Matches: 252 (84.28%), Mismatches: 38 (12.71%), Indels: 9 (3.01%)
ATpairs: 44.84%, CGpairs: 55.16%, GTpairs: 0.00%
:i = 17878888
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 35752487
highcenter: 35752535
testcenter: 35752511
im3: 93.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17878963 center: 35748717 interval size: 300 g: 3
Alignment explanation
Indices: 17869684--17869956,17878764--17879026 Loop: 8807 Score: 289
Left Length: 273 Right Length: 263 Average length: 268.0
3 most common centers (desc): 35748717 35748720 35748710
17869674 >> (LF) TTGTAAAATT
17879036 << (RF) AAAAACAAAC
17869684 >> TTTTTTTTTTTTTTGAGGCGGAGTCTCGCTCCGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCTGCTCACTGC >> 17869758
17879026 << ***C***C*********T*********A***A**-*----*--*****G*******AC*T*****C********* << 17878959
17869759 >> AAGCTCCGCCACCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCTCA-AGTAGCTGGGACTACAGGTGTCCACTA >> 17869832
17878958 << **G*******A**A*******T**T*******************-**C***********A********G**C*G* << 17878885
17869833 >> CCAAGCCCAGCTAATTTTTTTTTATATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGTCAGGATGGTCTTGATC >> 17869907
17878884 << ***A*A********G*****C*-**-****-*******************AT****C*G****G******GT*T* << 17878813
17869908 >> TCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA >> 17869956
17878812 << *****************C***A****C*******************G** << 17878764
Statistics
Matches: 227 (82.85%), Mismatches: 35 (12.77%), Indels: 12 (4.38%)
ATpairs: 46.26%, CGpairs: 53.74%, GTpairs: 0.00%
:i = 17878963
tupleindex: 3
intervalindex: 1
matches_in_interval: 138.0000
lowcenter: 35748693
highcenter: 35748741
testcenter: 35748717
im3: 67.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879035 center: 35748410 interval size: 300 g: 3
Alignment explanation
Indices: 17869365--17869670,17878738--17879035 Loop: 9067 Score: 222
Left Length: 306 Right Length: 298 Average length: 302.0
3 most common centers (desc): 35748408 35748410 35748411
17869355 >> (LF) CTGTTTTTTG
17879045 << (RF) AATAAACTCA
17869365 >> TTTTGTTTGGTTTTGTTTGGTTTTGTTGAGACAGGGTCTTGCTCTATTGCCCAGGTCGGAGTGCAGTGGTGCGAT >> 17869439
17879035 << *********-***-*****-****-*******C*T****--****G*-*A---***-****G**********T** << 17878972
17869440 >> TATAGCTCACTGCAGCCTCGATCTTCTTTGCTCA-GCAATACTCCTGCCTCAGCCTCTCA-AGTAGCTGGGATAA >> 17869512
17878971 << GAGC**********T****GCG**G**CC*A***T*****A****************-**C************A* << 17878898
17869513 >> CAGGCGCAC-CCAC-ATGCCTGGCTAATTTTTTTGATTTTTGGTAGAGAGAGGTCTTG-CTGTGTTGCCCAGGCT >> 17869584
17878897 << ****A**G*C****G***A*GT*****G*****CA******T*******G***CA**GT**T*****C******* << 17878823
17869585 >> GGTTTGGAACTCCTGAACTCAAGTGATAC-CCCTGCCACGGCCTCCTAA-GTCCTGGGATTACAGGTGTGAGCCA >> 17869657
17878822 << ***G*GT*********G***--*****G*C****-**A********G**T**C******G*****TG******** << 17878751
17869658 >> CCATGCCTGTCCT >> 17869670
17878750 << A**G***G*C*** << 17878738
Statistics
Matches: 241 (77.00%), Mismatches: 50 (15.97%), Indels: 22 (7.03%)
ATpairs: 47.72%, CGpairs: 52.28%, GTpairs: 0.00%
:i = 17879035
tupleindex: 3
intervalindex: 1
matches_in_interval: 188.0000
lowcenter: 35748386
highcenter: 35748434
testcenter: 35748410
im3: 37.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879744 center: 35758738 interval size: 160 g: 2
Alignment explanation
Indices: 17878741--17879049,17879690--17880004 Loop: 640 Score: 349
Left Length: 309 Right Length: 315 Average length: 312.0
3 most common centers (desc): 35758745 35758744 35758738
17878731 >> (LF) TGCCCCTAGG
17880014 << (RF) TCTTAATTTT
17878741 >> CCGGGCGTGATGGCTCACGTCTGTAGTCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGAGTT >> 17878815
17880004 << *******G*C*******A*G*****T********************T***G**********A***G***TT**T* << 17879930
17878816 >> TGAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAAG-TTAGCTGGACATGGTGGCG >> 17878889
17879929 << G*****A*A************C*********G****C*****************TT********C*C*T*****T << 17879855
17878890 >> GGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTG >> 17878964
17879854 << G**C*******************T********************G*********AC******************* << 17879780
17878965 >> AGCCGAGATTGCACCACTGCGCTCCA-C----C-ACAGAGAGAGACTCCGTCTCAAAAAACAAACAAACAAACAA >> 17879033
17879779 << *********C**C******AT*****C*CACT*C******G*******C***********-***A**A-**AA** << 17879707
17879034 >> AAACTCA-AATAACAAA >> 17879049
17879706 << *G**G**C**CG***** << 17879690
Statistics
Matches: 264 (83.28%), Mismatches: 43 (13.56%), Indels: 10 (3.15%)
ATpairs: 46.97%, CGpairs: 53.03%, GTpairs: 0.00%
:i = 17879744
tupleindex: 2
intervalindex: 2
matches_in_interval: 121.0000
lowcenter: 35758720
highcenter: 35758756
testcenter: 35758738
im3: 23.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17879744 center: 35750002 interval size: 300 g: 3
Alignment explanation
Indices: 17869981--17870291,17879711--17880020 Loop: 9419 Score: 356
Left Length: 311 Right Length: 310 Average length: 310.5
3 most common centers (desc): 35750001 35750003 35750002
17869971 >> (LF) TAAAGTTAAA
17880030 << (RF) AACAAGTAAA
17869981 >> AAAAAATGATTTTAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGTGGAT >> 17870055
17880020 << **C***T**T**T*TT*G******C********A****************************T****C**G**** << 17879946
17870056 >> CACCTGAGGTCAGGAGTTCAAGACCAACCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAA--T >> 17870128
17879945 << **--****G***TT**T**C****A*A****C*****************G****C*****************TT* << 17879873
17870129 >> TAGCCAGGCATGGTGGTGGGTGTTTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGG >> 17870203
17879872 << ****AC***C*T****GTG*G*GG****T***********GT*********************C*********** << 17879798
17870204 >> GAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAA >> 17870278
17879797 << *****C*********************CC********A********C**TG-***************CC****** << 17879724
17870279 >> AAAAAAAAAAAAA >> 17870291
17879723 << *******A**A** << 17879711
Statistics
Matches: 261 (83.39%), Mismatches: 47 (15.02%), Indels: 5 (1.60%)
ATpairs: 47.89%, CGpairs: 52.11%, GTpairs: 0.00%
:i = 17879744
tupleindex: 3
intervalindex: 1
matches_in_interval: 128.0000
lowcenter: 35749978
highcenter: 35750026
testcenter: 35750002
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879787 center: 35746283 interval size: 300 g: 3
Alignment explanation
Indices: 17866279--17866572,17879714--17879996 Loop: 13141 Score: 292
Left Length: 294 Right Length: 283 Average length: 288.5
3 most common centers (desc): 35746277 35746283 35746275
17866269 >> (LF) GGCCAGGTTG
17880006 << (RF) TTGGCCCGCG
17866279 >> GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGACGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGAC >> 17866353
17879996 << *********A************************C********C*********-*-***G***TT**T******* << 17879924
17866354 >> CAGCCTGGCCAACATGATGAAACCCCATCTCTACTAAAAATACAAAAAAAAAAAAAATTAGGCAGGCGTGGTGGT >> 17866428
17879923 << A*A*************C*********C***C*******************-------****GAC*****T****G << 17879856
17866429 >> GCATGCCTGTAATCCTAACTATCTG-GGAGGCTGAATG-GGATGATTGCTTGAACCTGGGAGGCAGAGGTTGCAG >> 17866501
17879855 << T*CG***********G*C***-**GT*********CCGT***CT**G*****************C********** << 17879782
17866502 >> TGAGCCGAGATCGCGCCACTGCACACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAAAAAAAAAA >> 17866572
17879781 << ***********C*********A**--******C**TG-*****T*G*******C**************A** << 17879714
Statistics
Matches: 242 (81.76%), Mismatches: 39 (13.18%), Indels: 15 (5.07%)
ATpairs: 47.52%, CGpairs: 52.48%, GTpairs: 0.00%
:i = 17879787
tupleindex: 3
intervalindex: 1
matches_in_interval: 127.0000
lowcenter: 35746259
highcenter: 35746307
testcenter: 35746283
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879837 center: 35755758 interval size: 300 g: 3
Alignment explanation
Indices: 17875752--17876053,17879708--17880005 Loop: 3654 Score: 202
Left Length: 302 Right Length: 298 Average length: 300.0
3 most common centers (desc): 35755758 35755757 35755760
17875742 >> (LF) CATTTGTAGG
17880015 << (RF) TTCTTAATTT
17875752 >> ACCAGACACGGTGGCTCACACCGGTAATCTCAGCACTTTGGGAGGCTGAGGTAGGAGGATCACTTGAGGCCAGGA >> 17875826
17880005 << ***C*C*C**********AC**A******G****************GT***GC**G******-*-***GA**TT* << 17879933
17875827 >> GTTCAAGACCAGCCAGGGCCAACATAGTTGAGACCCTATCTCCACAAAAAATA-AAAAA--TTAGCTGGATGTGG >> 17875898
17879932 << *T**C****A*A**A**-*******C**-**T****GC***CA**A*******G*****TT********CG**T* << 17879860
17875899 >> TGGCATGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAAGAAGATTGAGGCT >> 17875973
17879859 << *****G*G*******T************************GT****T***C*****T**ACC**C*GC-****-* << 17879787
17875974 >> TGCAGTGAGCTCTGA---CAACACTGCAACTCCAGCCTGGGGTGACAAAGGCTAAGACTCTGTCTCAAAAAAAAA >> 17876045
17879786 << **********GCT**ACC*CG*****A*-*******C**TG*--***C**-*C*-*****C************** << 17879717
17876046 >> AAA-AATTA >> 17876053
17879716 << A**A***** << 17879708
Statistics
Matches: 233 (75.40%), Mismatches: 58 (18.77%), Indels: 18 (5.83%)
ATpairs: 47.64%, CGpairs: 52.36%, GTpairs: 0.00%
:i = 17879837
tupleindex: 3
intervalindex: 1
matches_in_interval: 134.0000
lowcenter: 35755734
highcenter: 35755782
testcenter: 35755758
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879844 center: 35747820 interval size: 300 g: 3
Alignment explanation
Indices: 17867820--17868106,17879713--17880002 Loop: 11606 Score: 303
Left Length: 287 Right Length: 290 Average length: 288.5
3 most common centers (desc): 35747820 35747822 35747824
17867810 >> (LF) TTATGAGGCT
17880012 << (RF) TTAATTTTGG
17867820 >> GGGCACGGTGGCTCACACCTGTAATCTCTGCACTTTGGGAGGCCGAGGCAAGTGGATCACTTGAGGCCAGCAGTT >> 17867894
17880002 << ****C**********AC*********G*T***************T****CC*G******-*-***GA**TT**T* << 17879930
17867895 >> CGAGACCAGCCTGACCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAAAA--TTAGCTGGGTG--GTGGCA >> 17867965
17879929 << ******A*A****C****GT************C***C*****************TT*********G*AT****** << 17879855
17867966 >> CATGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAAGAGAATTGCTTGAACCCAGGAGGCGGAGGCTGCAGTG >> 17868040
17879854 << *CG**************G*****T*************C******G*********AC***********A******* << 17879780
17868041 >> AGCCGAGATTGTGCCTCTGCACTCCAGCCTGGGCAACAGAGC-AGACCCTGTAAAAAAGAAAAA-AAT >> 17868106
17879779 << *********C*G***T***A********C**T-*C*******C****A*C**GAG***T*****A*** << 17879713
Statistics
Matches: 240 (81.91%), Mismatches: 44 (15.02%), Indels: 9 (3.07%)
ATpairs: 45.00%, CGpairs: 55.00%, GTpairs: 0.00%
:i = 17879844
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 35747796
highcenter: 35747844
testcenter: 35747820
im3: 64.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17879859 center: 35752742 interval size: 300 g: 3
Alignment explanation
Indices: 17872748--17873027,17879711--17880002 Loop: 6683 Score: 219
Left Length: 280 Right Length: 292 Average length: 286.0
3 most common centers (desc): 35752742 35752744 35752750
17872738 >> (LF) AAGCAGGGCT
17880012 << (RF) TTAATTTTGG
17872748 >> GGGCTCAATGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGC--A----GAGCCCAGGAGTTCG >> 17872816
17880002 << ****C*CC*******A***********G*********************C***CC*AGTA****A**TT**T*** << 17879928
17872817 >> AGACCAGTCTGGCCAACATGGCAAAGCCCCATCTCTACAAAAAATATAAAAA--TTAGCCGGGCATGGTGGCACG >> 17872889
17879927 << ****A*AG*************AC**T****C***C***A*******G*****TT*****A****C*T******** << 17879853
17872890 >> TGCCTGTTGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCCA-AGG-G----T-GCAGTGAG >> 17872957
17879852 << G******TT************************GT****T**G******T**ACCC***G*CTCC*A******** << 17879778
17872958 >> CCATGATAGCGCCACTGCACTCCAGCCTGGGTGACAGAGCAAAAGACCTTGTCTTCAAAAAAATTAAGAA >> 17873027
17879777 << **CT***C*********A********C**TG-********C*--***AGC****GT*******T***A** << 17879711
Statistics
Matches: 228 (77.29%), Mismatches: 49 (16.61%), Indels: 18 (6.10%)
ATpairs: 44.74%, CGpairs: 55.26%, GTpairs: 0.00%
:i = 17879859
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 35752718
highcenter: 35752766
testcenter: 35752742
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17880612 center: 35749773 interval size: 300 g: 3
Alignment explanation
Indices: 17869140--17869224,17880549--17880641 Loop: 11324 Score: 55
Left Length: 85 Right Length: 93 Average length: 89.0
3 most common centers (desc): 35749777 35749776 35749773
17869130 >> (LF) AATAGGAAGT
17880651 << (RF) TTCTTGACTC
17869140 >> AGGGAA-ATGGAAAAAT-ATGGA-ATATA-TATATATTACATATATACACACACAT-ACATACATACATACATAC >> 17869209
17880641 << ***T**A******CC**A**TG*A*****T*********A*******A*A******A*A***A***A*****G** << 17880567
17869210 >> ATAC---ATACATACATA >> 17869224
17880566 << **AAACA***A******* << 17880549
Statistics
Matches: 70 (75.27%), Mismatches: 15 (16.13%), Indels: 8 (8.60%)
ATpairs: 87.14%, CGpairs: 12.86%, GTpairs: 0.00%
:i = 17880612
tupleindex: 3
intervalindex: 1
matches_in_interval: 266.0000
lowcenter: 35749749
highcenter: 35749797
testcenter: 35749773
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17893586 center: 35772405 interval size: 300 g: 3
Alignment explanation
Indices: 17878751--17878990,17893412--17893656 Loop: 14421 Score: 151
Left Length: 240 Right Length: 245 Average length: 242.5
3 most common centers (desc): 35772407 35772402 35772406
17878741 >> (LF) CCGGGCGTGA
17893666 << (RF) TTAGTCGGTC
17878751 >> TGGCTCACGTCTGTAGTCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAG-GTC-AGGAGTTTGAGACCA >> 17878823
17893656 << ****C**A*G*****T*A*A***********AT**A**T*A***A*****A*AA*T*G*A*********C***** << 17893582
17878824 >> GCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAAGTTAGCTGGACATGGTGGCGGGCACCTGT >> 17878898
17893581 << ****GTC******C*****************T-***AC**A*A***-*******TC********ATGT*A***** << 17893509
17878899 >> AATCCCAGCTACTCTGGAGGCT-GAGGCAGGAGAATTGCT----TGAACCCAGGAGGCGGAGGTTGCAGTGAGCC >> 17878968
17893508 << *C*******GA**AC*****A*A**T*AA****C**G*T*GTGG***C*********AT***AG*********AA << 17893434
17878969 >> GAGATTGCACCACTGCGCTCCA >> 17878990
17893433 << *A*****AC*******T***** << 17893412
Statistics
Matches: 182 (73.68%), Mismatches: 56 (22.67%), Indels: 9 (3.64%)
ATpairs: 43.96%, CGpairs: 56.04%, GTpairs: 0.00%
:i = 17893586
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 35772381
highcenter: 35772429
testcenter: 35772405
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17895197 center: 35789037 interval size: 300 g: 3
Alignment explanation
Indices: 17893669--17893970,17895069--17895366 Loop: 1098 Score: 414
Left Length: 302 Right Length: 298 Average length: 300.0
3 most common centers (desc): 35789038 35789039 35789037
17893659 >> (LF) GGCTGATTTT
17895376 << (RF) GGCATCGTTG
17893669 >> TTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGGTGCAATCTCGGCCCACT >> 17893743
17895366 << ***********************************G*****************C***-***C*****T**A**** << 17895293
17893744 >> ACAATCTCCACCTCCCAGGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGTGCCCA >> 17893818
17895292 << C***G***AC**********-*-****GT********************GC******************G**T** << 17895220
17893819 >> CCACCACGCCCAGCTAATTTTT-GTATTTTTAGTAGAGATGAGGTTTCACCATGCTGGCCAGGCTGGTCTTGAAC >> 17893892
17895219 << ******A****C**********A****************GTC************A************G**G**** << 17895145
17893893 >> TCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGTTTATAGGCGTGAGCCATCACGCCCAGC >> 17893967
17895144 << C**********--**************A*******************T***G****T*******G*C******** << 17895072
17893968 >> CCC >> 17893970
17895071 << *** << 17895069
Statistics
Matches: 267 (88.12%), Mismatches: 30 (9.90%), Indels: 6 (1.98%)
ATpairs: 44.94%, CGpairs: 55.06%, GTpairs: 0.00%
:i = 17895197
tupleindex: 3
intervalindex: 1
matches_in_interval: 109.0000
lowcenter: 35789013
highcenter: 35789061
testcenter: 35789037
im3: 51.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17895239 center: 35788739 interval size: 300 g: 3
Alignment explanation
Indices: 17893371--17893657,17895082--17895364 Loop: 1424 Score: 225
Left Length: 287 Right Length: 283 Average length: 285.0
3 most common centers (desc): 35788739 35788734 35788737
17893361 >> (LF) TTCTGATGTA
17895374 << (RF) CATCGTTGAA
17893371 >> TTTTTATTTTTTTGAGATGG-GTTTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCACAACTCACTGCA >> 17893444
17895364 << *****A***********G**T**G*********G*********************AC*C***A**C********* << 17895290
17893445 >> GACTCTACCTCCTGGGCTCAGGTGATCGATCCTCCAACTTCAAACCTCCCAAGAGGCTGGGACTACAGGAGTGTA >> 17893519
17895289 << TG****C*****GT**A***T*GT**AG-****C*--**-**C-******C**AT*******A******G*GTG* << 17895220
17893520 >> CCACCATGCTCAGCTAATTTATA-TACATTTT-TAGAGACAGGGTTTCACCATGTTGCTGAGGCTGGTCCCAAAC >> 17893592
17895219 << *********G*C********A*AC**AA***TC************************CGG*******G*A*C*** << 17895145
17893593 >> TCCTAGGCTCAAGAGATCCACCCACTTCAGCTACCCAAAGTGCTAGAATTACAGGCATGCGCCAC >> 17893657
17895144 << C***CTG****A**--*******C*G*AC**GA***********C*C************T***** << 17895082
Statistics
Matches: 223 (76.90%), Mismatches: 57 (19.66%), Indels: 10 (3.45%)
ATpairs: 46.64%, CGpairs: 53.36%, GTpairs: 0.00%
:i = 17895239
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35788715
highcenter: 35788763
testcenter: 35788739
im3: 57.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17898533 center: 35792320 interval size: 300 g: 3
Alignment explanation
Indices: 17893675--17893968,17898351--17898643 Loop: 4382 Score: 341
Left Length: 294 Right Length: 293 Average length: 293.5
3 most common centers (desc): 35792318 35792320 35792316
17893665 >> (LF) TTTTTTTTTT
17898653 << (RF) GAGAGAGGAG
17893675 >> TTTTTTTTTGAGACGGAGTCTCACTCT-GTTGCCCAGGCTGGAGTGCAATGGGTGCAATCTCGGCCCACTACAAT >> 17893748
17898643 << **********C********A*******A****************G*******-****A***A***ACA**C***G << 17898570
17893749 >> CTCCACCTCCCAGGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGTGCCCACCACC >> 17893823
17898569 << ***AC***C**-**-******************************C*********T********G*********A << 17898497
17893824 >> ACGCCCAGCTAATTTTTGT--AT-TTT-TAGTAGAGATGAGGTTTCACCATGCTGGCCAGGCTGGTCTTGAACTC >> 17893894
17898496 << CA****C**********A*AA**T***C***********C************A*******T***G***GT***** << 17898422
17893895 >> CTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGTTTATAGGCGTGAGCCATCACGCCCAGCC >> 17893968
17898421 << ********-*-******C*******A************G*****T**-*G************GAC*****C*** << 17898351
Statistics
Matches: 252 (84.28%), Mismatches: 36 (12.04%), Indels: 11 (3.68%)
ATpairs: 44.44%, CGpairs: 55.56%, GTpairs: 0.00%
:i = 17898533
tupleindex: 3
intervalindex: 1
matches_in_interval: 131.0000
lowcenter: 35792296
highcenter: 35792344
testcenter: 35792320
im3: 43.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17910564 center: 35820984 interval size: 40 g: 1
Alignment explanation
Indices: 17910223--17910466,17910522--17910760 Loop: 55 Score: 246
Left Length: 244 Right Length: 239 Average length: 241.5
3 most common centers (desc): 35820982 35820983 35820984
17910213 >> (LF) GTGGATCACC
17910770 << (RF) ACCGTCTAGT
17910223 >> TGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAA-TTAGCC >> 17910296
17910760 << ************T*G*******A***T*CA****GT********AAC*************G*******T****** << 17910686
17910297 >> AGGTGTGGTGGCATGCTCCTGTAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGT >> 17910371
17910685 << CA*GT******ACC**T******C********T***************************C*********G***G << 17910611
17910372 >> GGAGGTTGCAGTGAACTGAGATCATCGTGCTCTGCACTCCAGCCTGAGCAACAGAGCAAGACACTATCTAAAAAA >> 17910446
17910610 << ****G*********C*G*****AC-*TG-*T***************C*********T*****A**C***G***** << 17910538
17910447 >> GAAAAGAAGGAAAAAAAAAC >> 17910466
17910538 << -****-**--*******C** << 17910522
Statistics
Matches: 199 (81.22%), Mismatches: 39 (15.92%), Indels: 7 (2.86%)
ATpairs: 51.26%, CGpairs: 48.74%, GTpairs: 0.00%
:i = 17910564
tupleindex: 1
intervalindex: 2
matches_in_interval: 178.0000
lowcenter: 35820976
highcenter: 35820992
testcenter: 35820984
im3: 22.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 17910571 center: 35819474 interval size: 300 g: 3
Alignment explanation
Indices: 17908721--17908947,17910527--17910754 Loop: 1579 Score: 157
Left Length: 227 Right Length: 228 Average length: 227.5
3 most common centers (desc): 35819474 35819475 35819476
17908711 >> (LF) CATTTGACTC
17910764 << (RF) TAGTACTCCA
17908721 >> CAGGAGTTCAAGACCAACCTGGCCAACATCA-TGAAACCCAATCTCTACAAAAAATACACAAA-TTAGCCAGGTG >> 17908793
17910754 << ******T**C******A***T*CA****-**C*******AAC*******A*****G***T***T******CA*GT << 17910681
17908794 >> TGGTTGCATGCAGCTGTAGTCTCAGATACTCTGAAGGCTGGGGTGAGAGGATCACCTGAGCCCAGGAAATTGAGG >> 17908868
17910680 << ****C*ACC***G********G***G*****T*C******T**GTC***T**CC*C***T**AC*G*CCGC***G << 17910606
17908869 >> CTGCAGTGAGCTATGATAACATCATGGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTAAAAAAAGAAAAA >> 17908943
17910605 << A**********GCT***AC**G**GA***************GT******T************G******T***** << 17910531
17908944 >> AAAA >> 17908947
17910530 << **** << 17910527
Statistics
Matches: 170 (74.24%), Mismatches: 56 (24.45%), Indels: 3 (1.31%)
ATpairs: 52.35%, CGpairs: 47.65%, GTpairs: 0.00%
:i = 17910571
tupleindex: 3
intervalindex: 1
matches_in_interval: 225.0000
lowcenter: 35819450
highcenter: 35819498
testcenter: 35819474
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17910576 center: 35809176 interval size: 300 g: 3
Alignment explanation
Indices: 17898404--17898643,17910534--17910769 Loop: 11890 Score: 252
Left Length: 240 Right Length: 236 Average length: 238.0
3 most common centers (desc): 35809176 35809173 35809177
17898394 >> (LF) GGCCAAGGCG
17910779 << (RF) ACTGACAAAA
17898404 >> GGCGGATCACGAGGTCAGGAGTTTGAGAGCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTACAAATATAAA >> 17898478
17910769 << ***T*****A***********T*G****G**AG**T*CA****GT********AAC*********-***-*G*G* << 17910697
17898479 >> AAAAAATTAGCCGGGCACAGTGGTGGGCGCCTGTAATTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTG >> 17898553
17910696 << *****-*******A***AC*********T******C*G*******************************CC*C** << 17910623
17898554 >> AACCCGGCAGGCAGAGGTTGCAGACAGCCAAGAATGCACCATTGCGCTCCAGCCTGGGCAACAAGAGTGAAACTC >> 17898628
17910622 << ****A*******C***G******AC****C***A*******G***T*****************-***TT*C**** << 17910549
17898629 >> CGTCCCAAAAAAAAA >> 17898643
17910548 << A***A********** << 17910534
Statistics
Matches: 196 (81.67%), Mismatches: 40 (16.67%), Indels: 4 (1.67%)
ATpairs: 47.96%, CGpairs: 52.04%, GTpairs: 0.00%
:i = 17910576
tupleindex: 3
intervalindex: 1
matches_in_interval: 140.0000
lowcenter: 35809152
highcenter: 35809200
testcenter: 35809176
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17910601 center: 35813104 interval size: 300 g: 3
Alignment explanation
Indices: 17902437--17902574,17910531--17910667 Loop: 7956 Score: 94
Left Length: 138 Right Length: 137 Average length: 137.5
3 most common centers (desc): 35813104 35813105 0
17902427 >> (LF) TGGCACATGT
17910677 << (RF) ACCACCCGTG
17902437 >> CTATAATCCTAGCTACTTTGGAGTCTGAGGCAGTAGGATTGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCTA >> 17902511
17910667 << **C**C***G*******GT****C*********C**T**C**C***T**AC*G**CGC***GA**********GC << 17910593
17902512 >> TGGTTATACCACTGCACTCTAGACTGGGTGACAGAGCAAAAACAATACCACAAAAAAAAAAAA >> 17902574
17910592 << T*T**CG************G**G*****GT******-***C**AG*CA*A************* << 17910531
Statistics
Matches: 102 (73.91%), Mismatches: 35 (25.36%), Indels: 1 (0.72%)
ATpairs: 50.98%, CGpairs: 49.02%, GTpairs: 0.00%
:i = 17910601
tupleindex: 3
intervalindex: 1
matches_in_interval: 194.0000
lowcenter: 35813080
highcenter: 35813128
testcenter: 35813104
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17912775 center: 35821676 interval size: 300 g: 3
Alignment explanation
Indices: 17908662--17908925,17912751--17913012 Loop: 3825 Score: 208
Left Length: 264 Right Length: 262 Average length: 263.0
3 most common centers (desc): 35821675 35821676 35821673
17908652 >> (LF) GCTGGGCACT
17913022 << (RF) CGGTCCTCAC
17908662 >> GTAGCTCATGCCTGTAATCC-AGTACTTTGGGAGGTCAAGGAGAGAGGATCATTTGACTCCAGGAGTTCAAGACC >> 17908735
17913012 << **C********A********A**G******A****G*****G*C*A*******CT-*C**-*******AC***** << 17912940
17908736 >> AACCTGGCCAACATCATGAAACCCAATCTCTACAAAAAATACACAAATTAGCCAGGTGTGGT--TGCATGCAGCT >> 17908808
17912939 << *C******A*****CC********AC*****A*A*********T*********C**G*****CC*******--** << 17912867
17908809 >> GTAGTCTCAGATACTCTGAAGGCTGGGGTGAGAGGATCACCTGAGCCCAGGAAATTGAGGCTGCAGTGAGCTATG >> 17908883
17912866 << ***T**G***G****AC*C******T**GG****T**AC*A*A*T**-****CCGTT***A**********G*T* << 17912793
17908884 >> ATAACATCATGGCACTCCAGCCTGGGTGACAGAGCAAGACTC >> 17908925
17912792 << **ACAC****A***************G************A** << 17912751
Statistics
Matches: 205 (76.78%), Mismatches: 54 (20.22%), Indels: 8 (3.00%)
ATpairs: 49.27%, CGpairs: 50.73%, GTpairs: 0.00%
:i = 17912775
tupleindex: 3
intervalindex: 1
matches_in_interval: 112.0000
lowcenter: 35821652
highcenter: 35821700
testcenter: 35821676
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17912805 center: 35815306 interval size: 300 g: 3
Alignment explanation
Indices: 17902273--17902550,17912756--17913024 Loop: 10205 Score: 152
Left Length: 278 Right Length: 269 Average length: 273.5
3 most common centers (desc): 35815305 35815306 35815297
17902263 >> (LF) CCCAGAACCT
17913034 << (RF) TTATGTAAGT
17902273 >> TGGCCAGGCATGGTGGCTCACGCCTGTAATCCTCACATTCTGGGAGGCAAAGG-GAGAAGATCGCGTGAGGCCAG >> 17902346
17913024 << ********TC**********A**A*********TC**G*A**A*****G****G*C*AC****T--***T*A*** << 17912952
17902347 >> GAGTTTGAAACTCA-CCTGGGTAACACAGCAAGATCCCATCTATACAAAAAAAAATTTGTTTTTAAATTAGCCTG >> 17902420
17912951 << ********C**-**C*****G*****AC*AC*T*G**AC***G*A*A*****A*GTT-------*********C* << 17912885
17902421 >> GTGTGTTGGCACATGTCTATAATCCTAGCTACTTTGGAGTCTGAGGC-AGTAGGATTGCTTGAGCCCAGGAGTTT >> 17902494
17912884 << *G***C***AC****G**C******G********C****C*******G**-**T*******A*T**-*****CGT << 17912812
17902495 >> GAGGCTGCAGTGAGCTATGGTTATACCACTGCACTCTAGACTGGGTGACAGAGCAA >> 17902550
17912811 << T***A**********G*T*T**C*CA**A*******G**G*****G********** << 17912756
Statistics
Matches: 205 (72.95%), Mismatches: 61 (21.71%), Indels: 15 (5.34%)
ATpairs: 48.29%, CGpairs: 51.71%, GTpairs: 0.00%
:i = 17912805
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 35815282
highcenter: 35815330
testcenter: 35815306
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17912812 center: 35825139 interval size: 80 g: 2
Alignment explanation
Indices: 17912306--17912378,17912761--17912831 Loop: 382 Score: 57
Left Length: 73 Right Length: 71 Average length: 72.0
3 most common centers (desc): 35825139 35825137 35825138
17912296 >> (LF) CTTGGGAGGG
17912841 << (RF) TCCGGTCTCT
17912306 >> ATTGCTTGAGTCCAAGGAGTTAAAGGCTGCAGTAAGCCTTGATCGCAGCACTGCACTTCAGCCTGGGCAACAG >> 17912378
17912831 << *******A*T-***-****CG*****A******C****TT***A*ACA**A******G**********C**** << 17912761
Statistics
Matches: 56 (76.71%), Mismatches: 15 (20.55%), Indels: 2 (2.74%)
ATpairs: 44.64%, CGpairs: 55.36%, GTpairs: 0.00%
:i = 17912812
tupleindex: 2
intervalindex: 1
matches_in_interval: 32.0000
lowcenter: 35825127
highcenter: 35825151
testcenter: 35825139
im3: 27.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17912868 center: 35823183 interval size: 300 g: 3
Alignment explanation
Indices: 17910166--17910432,17912754--17913015 Loop: 2321 Score: 300
Left Length: 267 Right Length: 262 Average length: 264.5
3 most common centers (desc): 35823183 35823181 35823186
17910156 >> (LF) TCGGCGGGTC
17913025 << (RF) TACCGGTCCT
17910166 >> GTGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAG >> 17910240
17913015 << ***********A**A********A**G******A*****GT****C*********--***T************** << 17912943
17910241 >> ACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCATGC-T- >> 17910315
17912942 << ***********A***************AC*****A*********************C**G*******--***T*C << 17912870
17910314 >> CCTGTAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAACT >> 17910388
17912869 << ***************T**AC************GT******A****A****T**-***GTT************C*G << 17912796
17910389 >> GAGATCATCGTGCTCTGCACTCCAGCCTGAGCAACAGAGCAAGA >> 17910432
17912795 << T****AC*-**GT*-**************C**C*********** << 17912754
Statistics
Matches: 225 (83.64%), Mismatches: 35 (13.01%), Indels: 9 (3.35%)
ATpairs: 47.11%, CGpairs: 52.89%, GTpairs: 0.00%
:i = 17912868
tupleindex: 3
intervalindex: 1
matches_in_interval: 148.0000
lowcenter: 35823159
highcenter: 35823207
testcenter: 35823183
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17912870 center: 35811377 interval size: 300 g: 3
Alignment explanation
Indices: 17898351--17898634,17912745--17913023 Loop: 14110 Score: 286
Left Length: 284 Right Length: 279 Average length: 281.5
3 most common centers (desc): 35811373 35811377 35811378
17898341 >> (LF) AAAAGGAGGA
17913033 << (RF) TATGTAAGTA
17898351 >> GGCCGGGCGCAGTGGCTCACGCCTGTAATCC-AGCGCTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAG >> 17898424
17913023 << ****T**T*AC********A**A********A***T*****A**************A******A**T******** << 17912949
17898425 >> TTTGAGAGCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTACAAATATAAAAAAAAATTAGCCGGGCACAGT >> 17898499
17912948 << *******G***G*****A***************AC*****A***-***-***G*****--**********CAC** << 17912878
17898500 >> GGTGGGCGCCTGTAATTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGCAGGCAGAGGTTGC >> 17898574
17912877 << ****GTA*********G*********AC************GT******AC***A****T**-*****T******* << 17912804
17898575 >> AGACAGCCAAGAATGCACCATTGCGCTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCCC >> 17898634
17912803 << **AC********A**ACA******T*************C***-***GT*C*A***T**** << 17912745
Statistics
Matches: 231 (81.05%), Mismatches: 47 (16.49%), Indels: 7 (2.46%)
ATpairs: 44.16%, CGpairs: 55.84%, GTpairs: 0.00%
:i = 17912870
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 35811353
highcenter: 35811401
testcenter: 35811377
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17913012 center: 35825282 interval size: 80 g: 2
Alignment explanation
Indices: 17912270--17912304,17912978--17913012 Loop: 673 Score: 40
Left Length: 35 Right Length: 35 Average length: 35.0
3 most common centers (desc): 35825282 0 0
17912260 >> (LF) GCCAGGCACC
17913022 << (RF) CGGTCCTCAC
17912270 >> GTGGCTCACACCTGTAATCCTAGCAACTTGGGAGG >> 17912304
17913012 << ********AC*A*************GA***A**** << 17912978
Statistics
Matches: 29 (82.86%), Mismatches: 6 (17.14%), Indels: 0 (0.00%)
ATpairs: 48.28%, CGpairs: 51.72%, GTpairs: 0.00%
:i = 17913012
tupleindex: 2
intervalindex: 1
matches_in_interval: 33.0000
lowcenter: 35825270
highcenter: 35825294
testcenter: 35825282
im3: 21.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17913488 center: 35826450 interval size: 160 g: 2
Alignment explanation
Indices: 17912932--17913011,17913439--17913520 Loop: 427 Score: 55
Left Length: 80 Right Length: 82 Average length: 81.0
3 most common centers (desc): 35826450 35826452 0
17912922 >> (LF) CACCATGTTA
17913530 << (RF) GAGGAACTTG
17912932 >> GCCAGGCTGGTCTCAAACTCCTGACTT--CATGATCCACCCGCCTTGGCCTCACAAAGTGCTAGGATTACAAGCA >> 17913004
17913520 << ****A*AC*****AC********CA**AT************T***GTT*A*AG*******A*C********C**A << 17913446
17913005 >> TGAGCCA >> 17913011
17913445 << ****C** << 17913439
Statistics
Matches: 61 (74.39%), Mismatches: 19 (23.17%), Indels: 2 (2.44%)
ATpairs: 47.54%, CGpairs: 52.46%, GTpairs: 0.00%
:i = 17913488
tupleindex: 2
intervalindex: 2
matches_in_interval: 76.0000
lowcenter: 35826432
highcenter: 35826468
testcenter: 35826450
im3: 24.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17913590 center: 35826501 interval size: 160 g: 2
Alignment explanation
Indices: 17912716--17912935,17913566--17913807 Loop: 630 Score: 123
Left Length: 220 Right Length: 242 Average length: 231.0
3 most common centers (desc): 35826521 35826522 35826523
17912706 >> (LF) TAAATATATT
17913817 << (RF) TATCGGACTT
17912716 >> TCTTTTTCTTTTCTTTTTTTTTGGAGGCGGGGATGGAATCT--TGCTCTGTCGCCCAGGCTGGAGTGCAATGACA >> 17912788
17913807 << ***G*G******A**********T*TGT*T*GG*A*G-***CT***G*T*C*AC****T*******T*****C** << 17913734
17912789 >> CAATCTTGGCTCACTGCAACCTTTGCCTCCT-GGTTAAAGCAATTCTCTGGCCTCAGCCTCCCAAGTAGCTGGGA >> 17912862
17913733 << *G**************T*****G*******GT**G*G****C******GA*********G**ACA********** << 17913659
17912863 >> TTACAGGCATGCACCACCACGCCCGGCTAATTTTTGTATTTT--T-----A----G-A-----AG-AGA--CAGG >> 17912917
17913658 << *************A*****A****T*****T***********TT*AAACA*AAAA*A*AAAAA**A***CT**** << 17913584
17912918 >> GTTTCACCATGTTAGCCA >> 17912935
17913583 << ****AC************ << 17913566
Statistics
Matches: 180 (74.07%), Mismatches: 39 (16.05%), Indels: 24 (9.88%)
ATpairs: 51.67%, CGpairs: 48.33%, GTpairs: 0.00%
:i = 17913590
tupleindex: 2
intervalindex: 2
matches_in_interval: 98.0000
lowcenter: 35826483
highcenter: 35826519
testcenter: 35826501
im3: 23.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17917375 center: 35827587 interval size: 300 g: 3
Alignment explanation
Indices: 17910158--17910360,17917226--17917430 Loop: 6865 Score: 189
Left Length: 203 Right Length: 205 Average length: 204.0
3 most common centers (desc): 35827587 35827586 35827588
17910148 >> (LF) CAAAACAGTC
17917440 << (RF) AGTAGTGAAA
17910158 >> GGC-GGGTCGTGGTGGCTCACGCCTGTAA-TCCCAGAACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCA >> 17910230
17917430 << ***A****-**T*********T*******T**A***A******T*****GT***AC*******CC*A****GG** << 17917357
17910231 >> GGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAA-TACAAAAATTAGCCAGGTGTGG >> 17910304
17917356 << ******GTC**T********C************************AT*****T*************ACG*GT**T << 17917282
17910305 >> TGGCATGCTCCTGTAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATGGCTTGA >> 17910360
17917281 << *****GTAC*T***AC********T***************AC****C**A****** << 17917226
Statistics
Matches: 163 (79.13%), Mismatches: 39 (18.93%), Indels: 4 (1.94%)
ATpairs: 46.63%, CGpairs: 53.37%, GTpairs: 0.00%
:i = 17917375
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 35827563
highcenter: 35827611
testcenter: 35827587
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17921448 center: 35834288 interval size: 300 g: 3
Alignment explanation
Indices: 17912756--17913041,17921248--17921534 Loop: 8206 Score: 311
Left Length: 286 Right Length: 287 Average length: 286.5
3 most common centers (desc): 35834289 35834288 35834287
17912746 >> (LF) GGATGGAATC
17921544 << (RF) TCCACTTCAA
17912756 >> TTGCTCT-GTCGCCCAGGCTGGAGTGCAATGACACAATCTTGGCTCACTGCAACCTTTGCCTCCT-GGTTAAAGC >> 17912828
17921534 << *******A**A********************CACA*****G*******G*******GG*******T****G***A << 17921460
17912829 >> AATTCTCTGGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTAATTTTTGTATTT >> 17912903
17921459 << C*******A************AC*****AC***************TC**********A**********-****** << 17921386
17912904 >> TTAGAAGAGACAGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACTTCA--TGATCCACCCGCCTTG >> 17912976
17921385 << ****A*****AC*******AC******C*A************C******GT**G***CC*****AC********* << 17921311
17912977 >> GCCTCACAAAGTGCTAGGATTACAAGCATGAGCCACCACTCCTGGCCATGAATGTATTTCTTAAA >> 17913041
17921310 << *****G*********C********C*******T***AC*T*******-*-*G*GG*C******** << 17921248
Statistics
Matches: 239 (82.41%), Mismatches: 44 (15.17%), Indels: 7 (2.41%)
ATpairs: 47.70%, CGpairs: 52.30%, GTpairs: 0.00%
:i = 17921448
tupleindex: 3
intervalindex: 1
matches_in_interval: 138.0000
lowcenter: 35834264
highcenter: 35834312
testcenter: 35834288
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17921499 center: 35832087 interval size: 300 g: 3
Alignment explanation
Indices: 17910534--17910769,17921318--17921554 Loop: 10548 Score: 218
Left Length: 236 Right Length: 237 Average length: 236.5
3 most common centers (desc): 35832087 35832089 35832088
17910524 >> (LF) CTTTTTTTTT
17921564 << (RF) AGGTCAAGAG
17910534 >> TTTTTTTTTGAGACAGAGTCTTTCTCT-GTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAAGC >> 17910607
17921554 << ********G***CACT***A**C****A********************T*****A*************G****G* << 17921480
17910608 >> TCCGCCTGCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCACCACCATG >> 17910682
17921479 << *******G*A*******T*AC******A********************AC****A******GTACTC******G* << 17921405
17910683 >> CACGGCTAATTTTTTGTGTTTTTAGTAGAGACAAGGTTTCACTGTGTTACCTAGGATGGTCTCGATCTCCTGACC >> 17910757
17921404 << *GA**********--**T*************ACC******ACGT****CCAG***G*********T****GT*** << 17921332
17910758 >> TCA--TGATCTGCC >> 17910769
17921331 << ***CC********* << 17921318
Statistics
Matches: 189 (79.08%), Mismatches: 45 (18.83%), Indels: 5 (2.09%)
ATpairs: 49.21%, CGpairs: 50.79%, GTpairs: 0.00%
:i = 17921499
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35832063
highcenter: 35832111
testcenter: 35832087
im3: 67.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17922767 center: 35831639 interval size: 300 g: 3
Alignment explanation
Indices: 17908651--17908946,17922693--17922991 Loop: 13746 Score: 212
Left Length: 296 Right Length: 299 Average length: 297.5
3 most common centers (desc): 35831639 35831641 35831642
17908641 >> (LF) AAAATTCTCA
17923001 << (RF) GACCCTGTAA
17908651 >> GGCTGGGCACTGTAGCTCATGCCTGTAATCC-AGTACTTTGGGAGGTCAAGGAGAGAGGATCATTTGACTCCAGG >> 17908724
17922991 << ***G******C**C*****G***********G*TG***********G*C*****C*G****ACGG***CCA**** << 17922917
17908725 >> AGTTCAAGACCAACCTGGCCAACATCATGAAACCCAATCTCTACAAAAAATACACAAA--TTAGCCAGGTGTGGT >> 17908797
17922916 << *****C******CA***********CC******T*G********A*********T***TT*****AC**G***** << 17922842
17908798 >> TGCATGCAGCTGTAGTCTCAGATACTCTGAAGGCTGGGGTGAGAGGATCACCTGAGCCCAGGAAATTGAGGCTGC >> 17908872
17922841 << C**C***CG*****T*AG***G*****C*C*****TT*TGTC**TT***C*A***T**AC***CCGT****A*** << 17922767
17908873 >> AGTGAGCTATGATAACATCATGGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTAAAAAAAGAAAAAAAA >> 17908946
17922766 << *******GCT***G**CG**GA***A**********TG********C******G****G******T*****C** << 17922693
Statistics
Matches: 223 (74.58%), Mismatches: 73 (24.41%), Indels: 3 (1.00%)
ATpairs: 48.88%, CGpairs: 51.12%, GTpairs: 0.00%
:i = 17922767
tupleindex: 3
intervalindex: 1
matches_in_interval: 137.0000
lowcenter: 35831615
highcenter: 35831663
testcenter: 35831639
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17922773 center: 35844252 interval size: 300 g: 3
Alignment explanation
Indices: 17921247--17921563,17922689--17923010 Loop: 1125 Score: 332
Left Length: 317 Right Length: 322 Average length: 319.5
3 most common centers (desc): 35844252 35844253 35844257
17921237 >> (LF) GGGTAAGGCA
17923020 << (RF) GGACTAATGA
17921247 >> TTTTAAGAACTGG-AG-TAGGCCAGGTGCAGTGTCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGG >> 17921319
17923010 << **G**********C*GT*A****C**GT*C***C****G*************T**************C***T*** << 17922936
17921320 >> CAGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGACCAACATGCAGAAACCCCATCTCTACTAAAAATACAAA >> 17921394
17922935 << *C***AC********GT***************A***C********CA*****T********************** << 17922861
17921395 >> A---TTAGCCAGGCGTGGTGGCTCATGCCTGTAATCCCCACTACTCAGGAGGCTGAGGCAAGAGAATCACTTGAA >> 17921466
17922860 << *TTT*****AC***********CACG*********A**TC******C*******T**T**C**T****C****** << 17922786
17921467 >> CCTAGGAGGCGGAGGTTGCGGTGAGCCGAGATTACACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTTCA >> 17921541
17922785 << ***C******T********T************G**C***G****A**********T*C***-****C*C***G*C << 17922712
17921542 >> CCTCGAAAAAAAAGA-GAACTGG >> 17921563
17922711 << A***T********T*T******* << 17922689
Statistics
Matches: 263 (81.42%), Mismatches: 53 (16.41%), Indels: 7 (2.17%)
ATpairs: 46.39%, CGpairs: 53.61%, GTpairs: 0.00%
:i = 17922773
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 35844228
highcenter: 35844276
testcenter: 35844252
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17922773 center: 35833147 interval size: 300 g: 3
Alignment explanation
Indices: 17910168--17910455,17922695--17922981 Loop: 12239 Score: 350
Left Length: 288 Right Length: 287 Average length: 287.5
3 most common centers (desc): 35833149 35833147 35833148
17910158 >> (LF) GGCGGGTCGT
17922991 << (RF) CCGGCCCGTG
17910168 >> GGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGAC >> 17910242
17922981 << ***********************TG************G****TC**G****AC****************G***** << 17922907
17910243 >> CAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAA--TTAGCCAGGTGTGGTGGCATGCTCC >> 17910315
17922906 << ***A*******************T************************TT*****AC**G********C***C** << 17922832
17910316 >> TGTAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAACTGA >> 17910390
17922831 << ******A******T***C*******T**T*****T***G****************GT*************C*G** << 17922757
17910391 >> GATCATCGTGCTCTGCACTCCAGCCTGAGCAACAGAGCAAGACACTATCTAAAAAAGAAAAGAAG >> 17910455
17922756 << *****-**G-*T*****A*********CT*C*******C****A*GC***G*****T****-*** << 17922695
Statistics
Matches: 246 (84.83%), Mismatches: 39 (13.45%), Indels: 5 (1.72%)
ATpairs: 46.75%, CGpairs: 53.25%, GTpairs: 0.00%
:i = 17922773
tupleindex: 3
intervalindex: 1
matches_in_interval: 147.0000
lowcenter: 35833123
highcenter: 35833171
testcenter: 35833147
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17922778 center: 35836485 interval size: 300 g: 3
Alignment explanation
Indices: 17913617--17913797,17922696--17922870 Loop: 8898 Score: 156
Left Length: 181 Right Length: 175 Average length: 178.0
3 most common centers (desc): 35836485 35836493 35836487
17913607 >> (LF) ATACAAAATT
17922880 << (RF) TAGAGATGAT
17913617 >> AAAATACAAAAT--TTAGCTGGGCATGGTGATGCATGCCTGTAATCCCAGCTACACAGGGGGCTGAGGCAGGAGA >> 17913689
17922870 << ***********TTT**********C*****CG*ACG*********A********A*C**T****T**T*****T* << 17922796
17913690 >> ATCGCTTGAGCCTGGGAGGCAGAGGTTTCAGTGAGCCAAGATGGTGCCATTGTACTCCAGTCTGGCAGCCTGGGC >> 17913764
17922795 << *********T*****************C*********C****GTG****G**G*A*****G****-*-*--*--- << 17922728
17913765 >> ATCAGAGCAAGGCTCTGTTTCAAAAAAAAAAAA >> 17913797
17922727 << *-******C**T***G**G************** << 17922696
Statistics
Matches: 145 (79.23%), Mismatches: 28 (15.30%), Indels: 10 (5.46%)
ATpairs: 49.66%, CGpairs: 50.34%, GTpairs: 0.00%
:i = 17922778
tupleindex: 3
intervalindex: 1
matches_in_interval: 171.0000
lowcenter: 35836461
highcenter: 35836509
testcenter: 35836485
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17923338 center: 35846278 interval size: 80 g: 2
Alignment explanation
Indices: 17922717--17922965,17923313--17923559 Loop: 347 Score: 267
Left Length: 249 Right Length: 247 Average length: 248.0
3 most common centers (desc): 35846276 35846278 35846275
17922707 >> (LF) TGAGACGGAG
17923569 << (RF) TCAGAGAGAG
17922717 >> TCTCGCTCTGTCGTCCAGGCTGGAATGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG >> 17922791
17923559 << ****A********G**********C*T******A*GG****A***********GA***G**************** << 17923485
17922792 >> CGATT-TTCCTGTCTTAGCCTCCCGAGTAGCTGGAATTACAGGCGCACGCCACCACGCCCAGCTAATTTTTTTGT >> 17922865
17923484 << ****GG****TG*-*G*******A***G******C*G*******GAC*TA*****AT**************--** << 17923413
17922866 >> ATTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGCAATCCGCCCTC >> 17922940
17923412 << ************T****C****AC*A********************T********C*A***T*AC***C****T* << 17923338
17922941 >> CTCGGCCTCCCAAAGTGTTGGGATT >> 17922965
17923337 << *****************G**A**** << 17923313
Statistics
Matches: 205 (82.00%), Mismatches: 41 (16.40%), Indels: 4 (1.60%)
ATpairs: 45.85%, CGpairs: 54.15%, GTpairs: 0.00%
:i = 17923338
tupleindex: 2
intervalindex: 1
matches_in_interval: 29.0000
lowcenter: 35846266
highcenter: 35846290
testcenter: 35846278
im3: 18.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17923530 center: 35834111 interval size: 300 g: 3
Alignment explanation
Indices: 17910525--17910769,17923341--17923594 Loop: 12571 Score: 223
Left Length: 245 Right Length: 254 Average length: 249.5
3 most common centers (desc): 35834111 35834112 35834119
17910515 >> (LF) TACAAAAGTC
17923604 << (RF) AAAAAATTAA
17910525 >> TTTTTTTTTTTTTTTTTTGAGACAGAGTCT-T-TCTCTGT-T--G-C-CC-AGGCTGGAGTGCAGTGGTGCAATC >> 17910591
17923594 << ************************G*****G*G*****G*G*GA*A*C**G**********T*********G*** << 17923520
17910592 >> TCGGCTCACTGCAAGCTCCGCCTGCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACA >> 17910666
17923519 << *A***********GA********G*********T**C**G**A*GT*A*************G************* << 17923445
17910667 >> GGTGCCCACCACCATGCACGGCTAATTTTTTGTGTTTTTAGTAGAGACAAGGTTTCACTGTGTTACCTAGGATGG >> 17910741
17923444 << **GGAC**A******T*G*T**********-**T***********T*ACC*****AC**T****CC*G**TG*** << 17923371
17910742 >> TCTCGATCTCCTGACCTCA--TGATCTGCC >> 17910769
17923370 << ****T*T******C*A***TC*****C*** << 17923341
Statistics
Matches: 202 (79.22%), Mismatches: 42 (16.47%), Indels: 11 (4.31%)
ATpairs: 52.48%, CGpairs: 47.52%, GTpairs: 0.00%
:i = 17923530
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 35834087
highcenter: 35834135
testcenter: 35834111
im3: 73.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17923641 center: 35840900 interval size: 300 g: 3
Alignment explanation
Indices: 17917225--17917310,17923590--17923675 Loop: 6279 Score: 92
Left Length: 86 Right Length: 86 Average length: 86.0
3 most common centers (desc): 35840900 0 0
17917215 >> (LF) TGTCACCCAC
17923685 << (RF) TGGAGGACCT
17917225 >> CTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACAACATGCATGTGCCATCATGCGCAGCTAATTTT >> 17917299
17923675 << ****C*A********C**T**********T************A***C****T*T***T***T*TAC********* << 17923601
17917300 >> TGTATTTTTTT >> 17917310
17923600 << *AT******** << 17923590
Statistics
Matches: 70 (81.40%), Mismatches: 16 (18.60%), Indels: 0 (0.00%)
ATpairs: 57.14%, CGpairs: 42.86%, GTpairs: 0.00%
:i = 17923641
tupleindex: 3
intervalindex: 1
matches_in_interval: 158.0000
lowcenter: 35840876
highcenter: 35840924
testcenter: 35840900
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17923654 center: 35846461 interval size: 300 g: 3
Alignment explanation
Indices: 17922693--17922871,17923590--17923768 Loop: 718 Score: 99
Left Length: 179 Right Length: 179 Average length: 179.0
3 most common centers (desc): 35846461 35846460 35846462
17922683 >> (LF) AATGTCCCAG
17923778 << (RF) CCCAAAACAA
17922693 >> TTCTTTTTTTTT-TTTGAGACGGAGTCTCGCTCTGTCGTCCAGGCTGGAATGCAGTGGCGTGATCTCGGCTCACT >> 17922766
17923768 << **C****C****C********T*C*****T******AG-**********C*********TGT***T*T***T**G << 17923695
17922767 >> GCAACCTCTGCCTCCCAGGTTCAAGCGATTTTCCTGTCTT-AGCCTCCCGAGTAGCTGGAATTACAGGCGCACGC >> 17922840
17923694 << T**C****TT*****AC*TG***C*AT**GG***-*T*T*G*******AT*********C*G*******TA*AT* << 17923621
17922841 >> CACCACGCCCAGCTAATTTTTTTGTATTTTT >> 17922871
17923620 << **T**AT*TAC***********TT*A***** << 17923590
Statistics
Matches: 130 (71.82%), Mismatches: 47 (25.97%), Indels: 4 (2.21%)
ATpairs: 51.54%, CGpairs: 48.46%, GTpairs: 0.00%
:i = 17923654
tupleindex: 3
intervalindex: 1
matches_in_interval: 151.0000
lowcenter: 35846437
highcenter: 35846485
testcenter: 35846461
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17923675 center: 35846598 interval size: 160 g: 2
Alignment explanation
Indices: 17922909--17922971,17923627--17923689 Loop: 655 Score: 49
Left Length: 63 Right Length: 63 Average length: 63.0
3 most common centers (desc): 35846598 35846599 0
17922899 >> (LF) CCAGACTGGT
17923699 << (RF) ATTGGTGTCG
17922909 >> CTCGAACTCCTGACCTCAGGCAATCCGCCCTCCTCGGCCTCCCAAAGT-GTTGGGATTACAGGC >> 17922971
17923689 << ***T*G******CT******A*****A**CT*T**T******A**-**T*G*****G******* << 17923627
Statistics
Matches: 49 (76.56%), Mismatches: 13 (20.31%), Indels: 2 (3.13%)
ATpairs: 38.78%, CGpairs: 61.22%, GTpairs: 0.00%
:i = 17923675
tupleindex: 2
intervalindex: 2
matches_in_interval: 108.0000
lowcenter: 35846580
highcenter: 35846616
testcenter: 35846598
im3: 37.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 17926822 center: 35853074 interval size: 80 g: 2
Alignment explanation
Indices: 17926064--17926301,17926774--17927012 Loop: 472 Score: 136
Left Length: 238 Right Length: 239 Average length: 238.5
3 most common centers (desc): 35853076 35853072 35853074
17926054 >> (LF) CTTGAATTTG
17927022 << (RF) CACGCCACCG
17926064 >> GATCACGGCTCACTGCACCCTCTATCTCCTGGGCTCAATAGATCGTTCCACCTCAGCCTCCTGAGCAGCTGGGAC >> 17926138
17927012 << ****A*T**********TC****CG****G*G*A***ACAG**AG*G*AC****C**********A********* << 17926938
17926139 >> CACAGGTG--TGCACCACCAA-CCTGGCTAAT-TTTTAAAT-TTTTT-GTAGATACAGGATTTTATCATGTTACC >> 17926207
17926937 << A*****G*GG***-**-***GC**G*******T****AAC*T*****T*****C*AC**C***G*G*C*****C* << 17926865
17926208 >> CAGGCTAGTCTCGAACTCCAGGGCTCAAGTGATCCACCAGCTTCGGCCTGCCAAAGTGCTTGGGACCACAGGTGT >> 17926282
17926864 << ****T*C*****T*A**A*A*TG***--*******C**G**G*******G**********-**G*AA*****G** << 17926793
17926283 >> GAGCCACTGCACCCAGCCT >> 17926301
17926792 << *******GT*C***C**** << 17926774
Statistics
Matches: 178 (72.95%), Mismatches: 55 (22.54%), Indels: 11 (4.51%)
ATpairs: 42.13%, CGpairs: 57.87%, GTpairs: 0.00%
:i = 17926822
tupleindex: 2
intervalindex: 1
matches_in_interval: 30.0000
lowcenter: 35853062
highcenter: 35853086
testcenter: 35853074
im3: 15.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17927070 center: 35849766 interval size: 600 g: 3
Alignment explanation
Indices: 17922693--17922991,17926775--17927070 Loop: 3783 Score: 360
Left Length: 299 Right Length: 296 Average length: 297.5
3 most common centers (desc): 35849765 35849764 35849766
17922683 >> (LF) AATGTCCCAG
17927080 << (RF) GTCTCAAAAT
17922693 >> TTCTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGTCCAGGCTGGAATGCAGTGGCGTGATCTCGGCTCACTG >> 17922767
17927070 << **A****T*********T**T*******T********G**********C***C******--*****T******** << 17926998
17922768 >> CAACCTCTGCCTCCCAGGTTCAAGCGATTTTCCTGTCTTAGCCTCCCGAGTAGCTGGAATTACAGGCGCACGCCA >> 17922842
17926997 << ***C***********CG*****A*AG***G*****G**GC******A**********C*G*********GA***G << 17926923
17922843 >> CCACGCCCAGCTAAT-TTTTTTGTATTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAGACTGGTCTCGAACT >> 17922916
17926922 << ********C******T*************************C********C****T*****CT*******T*A** << 17926848
17922917 >> CCTGACCTCAGGCAATCCGCCCTCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGTGCCCGGCC >> 17922991
17926847 << A********CA*-*-*******C******************G***G*******************TG******** << 17926775
Statistics
Matches: 254 (84.67%), Mismatches: 41 (13.67%), Indels: 5 (1.67%)
ATpairs: 44.09%, CGpairs: 55.91%, GTpairs: 0.00%
:i = 17927070
tupleindex: 3
intervalindex: 2
matches_in_interval: 297.0000
lowcenter: 35849732
highcenter: 35849800
testcenter: 35849766
im3: 60.0000
frequent_center_ratio*rnkp: 41.4200
Found at i: 17931332 center: 35854903 interval size: 300 g: 3
Alignment explanation
Indices: 17923304--17923596,17931307--17931597 Loop: 7710 Score: 136
Left Length: 293 Right Length: 291 Average length: 292.0
3 most common centers (desc): 35854902 35854894 35854903
17923294 >> (LF) AGAGACAAGG
17931607 << (RF) TGTCAACGAG
17923304 >> AGGCCAATGAATCACAGCACTTT-GGGAGGCCGAGGTGGGCCGATCACTTGAAGCCAGGAGTTTGAGACCAGTCT >> 17923377
17931597 << *****AC*-****G****-***GT******T*G***GT**AT******G***C*A***T******C******G** << 17931525
17923378 >> GGCCAACATAGCAAAACCCCATTTCTACTAAAAATACAAAA-ATTAG--CTGGG-----T-A---TGG--TGATG >> 17923438
17931524 << *********C*AC******AC*G******************C*TT*TTT*TTTTTGTTT*A*CGG***GC**C** << 17931450
17923440 >> -CAGG--CCTGTAGTCCCAGCTGCTCAGGAGGCTGAAGTGGAAGGATCGCTTGAACCTGGGAGGCGGAGAGTGCA >> 17923510
17931449 << C****TC******T********T*G*C*********-*-*G*-***--*----***********A****CA**** << 17931384
17923511 >> GTGAGCCAAGATGGCACCACTGTACTCCAGCCTGGGCGACAGAGAGAGAGAGAGAGACTGTGTCTCAAAAAAAAA >> 17923585
17931383 << A******C****G*********G*************A****-*-**A****------**-*************** << 17931318
17923586 >> AAAAAAAAAAA >> 17923596
17931317 << *********** << 17931307
Statistics
Matches: 229 (73.63%), Mismatches: 44 (14.15%), Indels: 38 (12.22%)
ATpairs: 49.78%, CGpairs: 50.22%, GTpairs: 0.00%
:i = 17931332
tupleindex: 3
intervalindex: 1
matches_in_interval: 371.0000
lowcenter: 35854879
highcenter: 35854927
testcenter: 35854903
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17931354 center: 35858381 interval size: 300 g: 3
Alignment explanation
Indices: 17926775--17927075,17931307--17931615 Loop: 4231 Score: 230
Left Length: 301 Right Length: 309 Average length: 305.0
3 most common centers (desc): 35858388 35858374 35858390
17926765 >> (LF) ACTGAAGAGA
17931625 << (RF) TCACCCCAGA
17926775 >> GGCCGGGCGTGGTGGCTCACGCCTGTAATGCCAGCACTTT-GGGAGGCCGAGGCGGGCGGATCAC--GAGGTCAG >> 17926846
17931615 << *******CTGT**A*****C*********G*****-***GT******T*G****T**AT******GA******** << 17931542
17926847 >> AAGATTGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAA-AATA------------ >> 17926910
17931541 << ***A***C*****C******G****A**********AC********************C**T*TTTGTTTTTGTT << 17931467
17926910 >> -TTAGCCGGGCGTGGGGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCCGAGGCAGGAGAATGACATGAACGC >> 17926982
17931466 << T******A*******A******T*******T**********G*C******A************G--*-**C--*T << 17931397
17926983 >> GGGAGGCAGAGCTTGCAGTGAGCTGAGATCGC-C-ACCGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTTTC >> 17927055
17931396 << **A-**-**-*-*****A*****G********T*G**A***************A****T*********-***G** << 17931327
17927056 >> AAAAAAATAAAAAAATAAAA >> 17927075
17931326 << *******T*******T**** << 17931307
Statistics
Matches: 250 (78.13%), Mismatches: 40 (12.50%), Indels: 30 (9.38%)
ATpairs: 45.20%, CGpairs: 54.80%, GTpairs: 0.00%
:i = 17931354
tupleindex: 3
intervalindex: 1
matches_in_interval: 221.0000
lowcenter: 35858357
highcenter: 35858405
testcenter: 35858381
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17931378 center: 35852870 interval size: 300 g: 3
Alignment explanation
Indices: 17921251--17921554,17931318--17931629 Loop: 9763 Score: 184
Left Length: 304 Right Length: 312 Average length: 308.0
3 most common centers (desc): 35852879 35852861 35852870
17921241 >> (LF) AAGGCATTTT
17931639 << (RF) AAGATGACAG
17921251 >> AAGAACTGGAGTA-GGCCAGGTGCAGTGTCTCATGCCTGTAATCCCAGCACTTT-GGGAGGCCAAGGCGGGCAGA >> 17921323
17931629 << *****C***C**GA****C**CT****AC****C***************-***GT******T*G****T**A*** << 17931556
17921324 >> TCACCTGAGGTTGGGAGTTCGAGACCAGCCTGACCAACATGCAGAAACCCCATCTCTACTAAAAATACAAAA--- >> 17921397
17931555 << ***********GT*T****A*C**********C********CA*******AC********************CTT << 17931481
17921397 >> ---------------TTAGCCAGGCGTGGTGGCTCATGCCTGTAATCCCCACTACTCAGGAGGCTGAGGCAAGAG >> 17921455
17931480 << TTTTTGTTTTTGTTT******A***********TCCT************TC****G*C*************C*** << 17931406
17921456 >> AATCACTTGAACCTAGGAGGCGGAGGTTGCGGTGAGCCGAGATTACACCATTGCACTCCAGCCTGGGCAACAAGA >> 17921530
17931405 << **-*-**-*------*****A*********TA***********GC*****G****************AC****-* << 17931341
17921531 >> GCAAAACTTCACCTCGAAAAAAAA >> 17921554
17931340 << *AC*C****CA*-**T******** << 17931318
Statistics
Matches: 244 (75.31%), Mismatches: 48 (14.81%), Indels: 32 (9.88%)
ATpairs: 44.67%, CGpairs: 55.33%, GTpairs: 0.00%
:i = 17931378
tupleindex: 3
intervalindex: 1
matches_in_interval: 142.0000
lowcenter: 35852846
highcenter: 35852894
testcenter: 35852870
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17931432 center: 35859064 interval size: 300 g: 3
Alignment explanation
Indices: 17927623--17927759,17931308--17931441 Loop: 3548 Score: 104
Left Length: 137 Right Length: 134 Average length: 135.5
3 most common centers (desc): 35859069 35859064 35859067
17927613 >> (LF) TGGTGCACAT
17931451 << (RF) ACCGTCCTCG
17927623 >> CTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAGTCACTTGAGCTGGGCGGAGGCTGCAGTGAGCTGTGAT >> 17927697
17931441 << *****T**********G*C**********C*******T-*-**C*-*T-**A-*****A****A*****G*T*** << 17931372
17927698 >> CGTGCCACTGCACTTCAGCCAGGGCAACAAAGCAAGACCC--CTCAAAAAAAATTAAAAGAAAA >> 17927759
17931371 << **GT**********G*****A***AC******AC****AACA***********TT****T**** << 17931308
Statistics
Matches: 107 (76.98%), Mismatches: 25 (17.99%), Indels: 7 (5.04%)
ATpairs: 45.79%, CGpairs: 54.21%, GTpairs: 0.00%
:i = 17931432
tupleindex: 3
intervalindex: 1
matches_in_interval: 170.0000
lowcenter: 35859040
highcenter: 35859088
testcenter: 35859064
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17931482 center: 35855070 interval size: 300 g: 3
Alignment explanation
Indices: 17923568--17923770,17931309--17931506 Loop: 7538 Score: 116
Left Length: 203 Right Length: 198 Average length: 200.5
3 most common centers (desc): 35855079 35855070 35855073
17923558 >> (LF) GAGAGAGAGA
17931516 << (RF) ACCACTTTGG
17923568 >> CTGTGTCT-CAAAAAAAAAAAAA-AAAAAAATTAAAA-AA-TTAGCCATGTATGTTGGTATATGCCTGTAGTCCC >> 17923638
17931506 << ****G***T*A*****A*G****C*******GT****G**T******AC*GC**C***G*CCT*******T**** << 17931432
17923639 >> AGCTACTTAGGAGGCTGATGTCGGAGGATTACCTGAGTCCAGGAGGTTGAGGCTGTGGTTAGCTGTGATTGTGCC >> 17923713
17931431 << ******GGC*********C*GT****-*--*****-*----*-****C****A**GTA*C***G*T***G*GT** << 17931366
17923714 >> ACTGCACTCCAGCCTGGGA-ACAGAGTGAGACCCTGTCTCAAACAAAACAAAACAAAA >> 17923770
17931365 << ******************AC***T********A-*********T****T****T**** << 17931309
Statistics
Matches: 154 (74.04%), Mismatches: 39 (18.75%), Indels: 15 (7.21%)
ATpairs: 55.19%, CGpairs: 44.81%, GTpairs: 0.00%
:i = 17931482
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 35855046
highcenter: 35855094
testcenter: 35855070
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17931935 center: 35863369 interval size: 80 g: 2
Alignment explanation
Indices: 17931431--17931473,17931895--17931938 Loop: 421 Score: 46
Left Length: 43 Right Length: 44 Average length: 43.5
3 most common centers (desc): 35863369 35863368 0
17931421 >> (LF) CCCGGGTAGC
17931948 << (RF) GGGTTTCACA
17931431 >> TGGGATTACAGGCTCCTGCCACCACGCCAGGCTA-ATTTGTTTT >> 17931473
17931938 << *************C*CT*A*********A****CA*****T*** << 17931895
Statistics
Matches: 36 (81.82%), Mismatches: 7 (15.91%), Indels: 1 (2.27%)
ATpairs: 44.44%, CGpairs: 55.56%, GTpairs: 0.00%
:i = 17931935
tupleindex: 2
intervalindex: 1
matches_in_interval: 39.0000
lowcenter: 35863357
highcenter: 35863381
testcenter: 35863369
im3: 19.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17932000 center: 35863524 interval size: 80 g: 2
Alignment explanation
Indices: 17931311--17931595,17931926--17932217 Loop: 330 Score: 123
Left Length: 285 Right Length: 292 Average length: 288.5
3 most common centers (desc): 35863524 35863527 35863521
17931301 >> (LF) TATCGCTTTT
17932227 << (RF) AAGAAAAATC
17931311 >> TTTTTTTTTTTTTTTTGAGACAAGT-CTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCG----GCT >> 17931380
17932217 << **T***T***T*******T***C**A***C**G****CA*A*******************T*******GAGT*** << 17932143
17931381 >> CAATGCAACCTCCACCTCC-----CAGG---TTCTCCTGCCTCAGCCTCCCGGGTAGCTGGGATTACAGGCTCCT >> 17931447
17932142 << **G****************TCCAA**T*GTT******GT***********A*T**A****T*-**C*AG*TT*-* << 17932070
17931448 >> GCC-ACCACGCCAGGCTAATTTGTTTTTGTTTTTTTCTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTG >> 17931521
17932069 << T*TC*AACA****G-*TG*GGG*-----***TTT**-**C***-*************************C***** << 17932003
17931522 >> GCCAGGCTGGTCCCAAACTTCTGACCTCAGGTG--A-TCTACCTGCCTGGTCCTCCCTGAAG-GCTGGGATTACA >> 17931592
17932002 << *********A*AACC****G************TAG*T**G***GT***A*C**G***T-***A*A********** << 17931929
17931593 >> GGC >> 17931595
17931928 << *** << 17931926
Statistics
Matches: 218 (71.95%), Mismatches: 56 (18.48%), Indels: 29 (9.57%)
ATpairs: 47.25%, CGpairs: 52.75%, GTpairs: 0.00%
:i = 17932000
tupleindex: 2
intervalindex: 1
matches_in_interval: 32.0000
lowcenter: 35863512
highcenter: 35863536
testcenter: 35863524
im3: 19.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 17932030 center: 35854900 interval size: 1200 g: 3
Alignment explanation
Indices: 17922691--17922990,17931907--17932219 Loop: 8916 Score: 259
Left Length: 300 Right Length: 313 Average length: 306.5
3 most common centers (desc): 35854900 35854897 35854909
17922681 >> (LF) TCAATGTCCC
17932229 << (RF) TAAAGAAAAA
17922691 >> AGTTCTTTTTTT-TTTTTGAGACGGAGTCTCGCTCTGTCGTCCAGGCTGGAATGCAGTGGCGTGATCTCG----G >> 17922760
17932219 << ****T***T***T*******T**T*CA***************A********C********A*T*******GAGT* << 17932145
17922761 >> CTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTTTCCTGTCTTAGCCTCCCGAGTAGCTGGAATTACAGGCG >> 17922835
17932144 << **************GT*****-**********T***G***GTG**G*******A****A****-*C**C*AG*TT << 17932072
17922836 >> C-AC-G------CCACCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAG >> 17922902
17932071 << *A**T*TAACAC*******T***C*A***T****C***-*************GT*C********C********** << 17931998
17922903 >> ACTGGTCTCGAACTCCTGACCTCAGG---CAATCCGCCCTCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTG >> 17922974
17931997 << C***A*A*C*****************ATA******T***T***A****G************************G* << 17931923
17922975 >> AGCCACCGTGCCCGGC >> 17922990
17931922 << **A****TG***A*** << 17931907
Statistics
Matches: 249 (78.80%), Mismatches: 48 (15.19%), Indels: 19 (6.01%)
ATpairs: 45.38%, CGpairs: 54.62%, GTpairs: 0.00%
:i = 17932030
tupleindex: 3
intervalindex: 3
matches_in_interval: 683.0000
lowcenter: 35854850
highcenter: 35854950
testcenter: 35854900
im3: 62.0000
frequent_center_ratio*rnkp: 61.3600
Found at i: 17932063 center: 35849338 interval size: 300 g: 3
Alignment explanation
Indices: 17917226--17917425,17931911--17932119 Loop: 14485 Score: 158
Left Length: 200 Right Length: 209 Average length: 204.5
3 most common centers (desc): 35849338 35849345 35849335
17917216 >> (LF) GTCACCCACC
17932129 << (RF) TGGAGGTCCA
17917226 >> TCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTG-G--GA-C-AAC-ATGCAT-GTGCCATCATGCGCAGCT >> 17917293
17932119 << *********A**********************A****T*AA*GA*C***A*GTC**A******G**GT*G*C*A* << 17932045
17917294 >> AATTTTTGTATTTTTTTATAGAGATGGGGTTTCACCATGTTGCCCAGGCTGTTCCTGAACTCCTGGGCTCAAGC- >> 17917369
17932044 << **T******C******TC******GT**********C*****C**********AAC*********TG****C*AT << 17931970
17917369 >> -CA-TCCACCCACCTTGGCCTCTCAAAGTACTGAGATTTACAGGTGTGAGCCACTACACC >> 17917425
17931969 << A**T****************G*G******CA**C****-*****G*G***A***G**C** << 17931911
Statistics
Matches: 162 (77.14%), Mismatches: 37 (17.62%), Indels: 11 (5.24%)
ATpairs: 47.53%, CGpairs: 52.47%, GTpairs: 0.00%
:i = 17932063
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 35849314
highcenter: 35849362
testcenter: 35849338
im3: 36.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17936583 center: 35860094 interval size: 300 g: 3
Alignment explanation
Indices: 17923404--17923558,17936536--17936688 Loop: 12977 Score: 96
Left Length: 155 Right Length: 153 Average length: 154.0
3 most common centers (desc): 35860094 35860092 0
17923394 >> (LF) CCCCATTTCT
17936698 << (RF) TTTGTTTGTT
17923404 >> ACTAAAAATACAAAAATTAGCTGGGTATGGTGATGCAGGCCTGTAGTCCCAGCTGCTCAGGAGGCTGAAGTGGAA >> 17923478
17936688 << **T**G**T*T**G*C**********C*****C****GT*T*--****A*****T**CC*********CT**T** << 17936616
17923479 >> GGATCGCTTGAACCTGGGAGGCGGAGAGTGCAGTGAGCCAAGATGGCACCACTGTACTCCAGCCTGGGCGACAGA >> 17923553
17936615 << *T***TC**T*C*******TTAA***CG*TA********GA*****AA******G*************A**AC** << 17936541
17923554 >> GAGAG >> 17923558
17936540 << *G*** << 17936536
Statistics
Matches: 113 (72.90%), Mismatches: 40 (25.81%), Indels: 2 (1.29%)
ATpairs: 46.90%, CGpairs: 53.10%, GTpairs: 0.00%
:i = 17936583
tupleindex: 3
intervalindex: 1
matches_in_interval: 126.0000
lowcenter: 35860070
highcenter: 35860118
testcenter: 35860094
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17936593 center: 35860279 interval size: 300 g: 3
Alignment explanation
Indices: 17923576--17923773,17936504--17936699 Loop: 12730 Score: 113
Left Length: 198 Right Length: 196 Average length: 197.0
3 most common centers (desc): 35860279 35860278 35860277
17923566 >> (LF) GACTGTGTCT
17936709 << (RF) TTGTTTGTTT
17923576 >> CAAAAAAAAAAAAAAAAAAAATTAAAAAATTAGCCATGTATGTTGGTATATGCCTGTAGTCCCAGCTACTTAGGA >> 17923650
17936699 << ****G***G***G***G****--***G*C*****ACC**C**C****CG*GT*T*--****A********CC*** << 17936629
17923651 >> GGCTGATGTCGGAGGATTACCTGAGTCCAGGAGGTTGAGGCTGTGGTTAGCTGTGATTGTGCCACTGCACTCCAG >> 17923725
17936628 << ******CT*CTT**T**G*CA*T**G*AC***TT********T*T**C***GG****C**A************** << 17936554
17923726 >> CCTGGGA-ACAGAGTGAGACCCTGTCTCAAACAAAACAAAACAA-AACAA >> 17923773
17936553 << ******AC*AC***G***C***GT*****************T**G***** << 17936504
Statistics
Matches: 145 (72.50%), Mismatches: 49 (24.50%), Indels: 6 (3.00%)
ATpairs: 58.62%, CGpairs: 41.38%, GTpairs: 0.00%
:i = 17936593
tupleindex: 3
intervalindex: 1
matches_in_interval: 152.0000
lowcenter: 35860255
highcenter: 35860303
testcenter: 35860279
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17936763 center: 35860710 interval size: 300 g: 3
Alignment explanation
Indices: 17923901--17924032,17936676--17936810 Loop: 12643 Score: 112
Left Length: 132 Right Length: 135 Average length: 133.5
3 most common centers (desc): 35860710 35860708 35860711
17923891 >> (LF) GTGGTGGATG
17936820 << (RF) CGCCGGGTGT
17923901 >> CCTGTAATACCAGCTACTTGGA--GGCTGAGGCAGGAAGATCACTTGAGCCCAGGAGTTTGAGACCAGTTTGGGC >> 17923973
17936810 << ********G****T-****A**TT***GT***AC***C***************************A**G**TA** << 17936737
17923974 >> AACATAGTGAGACCCTGGCGCTAT-AAA-CAAACAAACAAATAAGCAAATAAATAAATAAA >> 17924032
17936736 << *******C***G*TA*TA*A***GG***T************G**T****G***G***T*** << 17936676
Statistics
Matches: 106 (77.94%), Mismatches: 25 (18.38%), Indels: 5 (3.68%)
ATpairs: 59.43%, CGpairs: 40.57%, GTpairs: 0.00%
:i = 17936763
tupleindex: 3
intervalindex: 1
matches_in_interval: 151.0000
lowcenter: 35860686
highcenter: 35860734
testcenter: 35860710
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 17939402 center: 35875059 interval size: 300 g: 3
Alignment explanation
Indices: 17935655--17935824,17939240--17939404 Loop: 3415 Score: 145
Left Length: 170 Right Length: 165 Average length: 167.5
3 most common centers (desc): 35875064 35875059 35875060
17935645 >> (LF) TACCAATTTT
17939414 << (RF) GTATTATAGG
17935655 >> CTGTATTAGTCTGTTCTTGCGCTGCTATAAAGAAGTACCTGAGGGTGGGTAATTTATAAAGAAAAGAGGTTTACT >> 17935729
17939404 << *********C*GT*******TT***********GT********TG**************-*******T****C-* << 17939332
17935730 >> TGGCTCACAGTTCTGCAGGCTGTCTGGGAAGCCTAGTGGCTTATGCTTCTAAGGAGGCCTCAGGAAATTTACAAT >> 17935804
17939332 << ---****AC*****T********TGT******T**G****T*G*******CC*****A****A***CG**G*AC* << 17939260
17935805 >> CATGGCAGAAGGTGAAGGGG >> 17935824
17939259 << ************GT****** << 17939240
Statistics
Matches: 133 (78.24%), Mismatches: 32 (18.82%), Indels: 5 (2.94%)
ATpairs: 56.39%, CGpairs: 43.61%, GTpairs: 0.00%
:i = 17939402
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 35875035
highcenter: 35875083
testcenter: 35875059
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Done.