Provide file with multiple alignment of sequences in MSF format:

Reference Sequence:  

Position 1 in the multiple alignment corresponds to
position in the gene sequence.

Provide file with RNA structure in M-FOLD's ct format:

Structure to be used in computation
Process all structures

Structure region of interest (optional, default is entire sequence):
        Start Index    End Index

Highlight positions with total support equal or greater than %

Output format:
HTML
Plain Text